Variant report

Variant	rs2288493
Chromosome Location	chr14:81611606-81611607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17630128	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]
rs2300540	0.94[JPT][hapmap]
rs2300541	0.94[JPT][hapmap]
rs2300542	0.94[JPT][hapmap]
rs2371562	0.87[MKK][hapmap]
rs733234	0.94[JPT][hapmap]
rs733236	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2288493	ESRRB	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81610600-81613400	Weak transcription	Thymus	Thymus
2	chr14:81610800-81613400	Weak transcription	Dnd41	blood
3	chr14:81610800-81630800	Weak transcription	Left Ventricle	heart
4	chr14:81611000-81611800	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr14:81611000-81612200	Enhancers	Brain Germinal Matrix	brain
6	chr14:81611000-81612200	Enhancers	Stomach Mucosa	stomach
7	chr14:81611000-81613600	Weak transcription	Fetal Thymus	thymus
8	chr14:81611000-81615800	Enhancers	Liver	Liver
9	chr14:81611200-81612000	Enhancers	Colon Smooth Muscle	Colon
10	chr14:81611200-81612000	Enhancers	Duodenum Mucosa	Duodenum
11	chr14:81611400-81612000	Enhancers	Stomach Smooth Muscle	stomach
12	chr14:81611400-81612200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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