Variant report

Variant	rs2300541
Chromosome Location	chr14:81607830-81607831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17630128	0.94[JPT][hapmap]
rs2288493	0.94[JPT][hapmap]
rs2300540	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2300542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs57800782	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs733234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs733235	0.98[ASN][1000 genomes]
rs733236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
2	chr14:81600200-81611000	Weak transcription	Liver	Liver
3	chr14:81600800-81609400	Weak transcription	Fetal Thymus	thymus
4	chr14:81604400-81609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:81607600-81608800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:81607800-81608800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr14:81607800-81609400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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