Variant report

Variant rs2288535
Chromosome Location chr19:20828778-20828779
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20814600-20842200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr19:20815000-20843400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr19:20815200-20843200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:20816200-20831000 ZNF genes & repeats Liver Liver
5 chr19:20816200-20843000 ZNF genes & repeats Primary hematopoietic stem cells blood
6 chr19:20816400-20842600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
7 chr19:20821000-20842400 Weak transcription K562 blood
8 chr19:20822600-20840000 Weak transcription Psoas Muscle Psoas
9 chr19:20822600-20842200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr19:20822600-20842800 Weak transcription HSMMtube muscle
11 chr19:20823600-20843200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr19:20824800-20832800 ZNF genes & repeats Fetal Brain Female brain
13 chr19:20825400-20839400 Weak transcription Brain Anterior Caudate brain
14 chr19:20825600-20832400 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr19:20825600-20840800 Weak transcription Muscle Satellite Cultured Cells --
16 chr19:20826800-20829600 Weak transcription Primary T cells fromperipheralblood blood
17 chr19:20826800-20832600 Weak transcription Stomach Mucosa stomach
18 chr19:20827000-20829400 Strong transcription Cortex derived primary cultured neurospheres brain
19 chr19:20827000-20831800 Weak transcription NHDF-Ad bronchial
20 chr19:20827000-20838400 Weak transcription Rectal Smooth Muscle rectum
21 chr19:20827000-20840800 Weak transcription Brain Cingulate Gyrus brain
22 chr19:20827000-20841000 Weak transcription Brain Inferior Temporal Lobe brain
23 chr19:20827000-20841400 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr19:20827000-20842400 Weak transcription Placenta Amnion Placenta Amnion
25 chr19:20827000-20842800 Weak transcription Gastric stomach
26 chr19:20827200-20829600 Strong transcription HUES48 Cell Line embryonic stem cell
27 chr19:20827200-20829600 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr19:20827200-20829800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr19:20827200-20829800 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr19:20827200-20829800 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr19:20827200-20829800 Weak transcription Thymus Thymus
32 chr19:20827200-20830400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr19:20827200-20830600 Weak transcription Lung lung
34 chr19:20827200-20830600 Weak transcription NHEK skin
35 chr19:20827200-20831800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr19:20827200-20832000 Weak transcription HSMM muscle
37 chr19:20827200-20833800 Weak transcription Placenta Placenta
38 chr19:20827200-20834000 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr19:20827200-20834000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr19:20827200-20834200 Weak transcription Ovary ovary
41 chr19:20827200-20834400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr19:20827200-20837000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr19:20827200-20837600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr19:20827200-20839800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr19:20827200-20840000 Weak transcription Brain Substantia Nigra brain
46 chr19:20827200-20841000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr19:20827200-20841000 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr19:20827200-20841200 Weak transcription Pancreas Pancrea
49 chr19:20827200-20841200 Weak transcription Right Ventricle heart
50 chr19:20827200-20842600 Weak transcription Brain Angular Gyrus brain

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