Variant report

Variant	rs2291734
Chromosome Location	chr15:33928500-33928501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33902112..33903948-chr15:33926108..33928940,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1435122	1.00[LWK][hapmap]
rs17236126	1.00[YRI][hapmap]
rs17817440	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2339307	1.00[LWK][hapmap]
rs2339310	1.00[LWK][hapmap]
rs28582856	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28696769	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2879413	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4477670	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59753482	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030266	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs8030946	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2291734	APBA2	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33913000-33932200	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33920400-33931200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:33920800-33931000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:33921200-33928800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:33921200-33928800	Strong transcription	Stomach Smooth Muscle	stomach
7	chr15:33922200-33938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:33922800-33928800	Strong transcription	Fetal Muscle Leg	muscle
9	chr15:33923200-33929000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:33923600-33929600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:33924200-33932000	Weak transcription	Brain Substantia Nigra	brain
13	chr15:33924400-33931000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:33924400-33936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:33925400-33931600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:33925600-33928800	Strong transcription	Aorta	Aorta
17	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
18	chr15:33926600-33930400	Weak transcription	Fetal Stomach	stomach
19	chr15:33927800-33931600	Weak transcription	Brain Germinal Matrix	brain
20	chr15:33928400-33931000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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