Variant report

Variant	rs8030266
Chromosome Location	chr15:33931751-33931752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17236126	1.00[YRI][hapmap]
rs17817440	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2291734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs28582856	0.92[ASN][1000 genomes]
rs28696769	0.92[ASN][1000 genomes]
rs2879413	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs4477670	0.87[ASN][1000 genomes]
rs59753482	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33913000-33932200	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33922200-33938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:33924200-33932000	Weak transcription	Brain Substantia Nigra	brain
6	chr15:33924400-33936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
8	chr15:33928800-33932000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:33928800-33936400	Weak transcription	Aorta	Aorta
10	chr15:33930400-33932200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:33930400-33932600	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:33931000-33932200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:33931000-33932400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:33931000-33947000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:33931200-33936600	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:33931200-33951400	Weak transcription	Spleen	Spleen
17	chr15:33931400-33932400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:33931400-33934600	Strong transcription	Stomach Smooth Muscle	stomach
19	chr15:33931600-33932800	Enhancers	Fetal Brain Male	brain
20	chr15:33931600-33933000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:33931600-33933400	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:33931600-33933600	Enhancers	Brain Germinal Matrix	brain

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