Variant report

Variant	rs2292336
Chromosome Location	chr3:156348422-156348423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156346639..156349927-chr3:156351146..156353666,3	K562	blood:
2	chr3:156347156..156349827-chr3:156350754..156354562,3	K562	blood:
3	chr3:156346980..156348606-chr3:156355155..156357044,2	K562	blood:
4	chr3:156346249..156348861-chr3:156392186..156393904,2	MCF-7	breast:
5	chr3:156347077..156349787-chr3:156893431..156895606,2	K562	blood:
6	chr3:156335907..156337985-chr3:156346780..156349354,2	MCF-7	breast:
7	chr3:156344548..156346713-chr3:156347054..156349702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13097957	0.87[CEU][hapmap];0.92[TSI][hapmap]
rs1983204	0.85[CHB][hapmap]
rs56097380	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7619192	0.91[ASN][1000 genomes]
rs9811767	0.93[ASW][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9819659	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156343600-156349600	Enhancers	NHEK	skin
2	chr3:156344400-156350200	Weak transcription	K562	blood
3	chr3:156345400-156349600	Enhancers	HMEC	breast
4	chr3:156345600-156349600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:156345600-156349600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:156345600-156350600	Enhancers	HSMMtube	muscle
7	chr3:156345800-156348600	Enhancers	Hela-S3	cervix
8	chr3:156345800-156349600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:156346000-156349400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:156346000-156349400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:156346000-156349600	Enhancers	Osteobl	bone
12	chr3:156346000-156349800	Enhancers	HSMM	muscle
13	chr3:156346600-156350800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:156346800-156350000	Weak transcription	Fetal Heart	heart
15	chr3:156347000-156352000	Enhancers	Fetal Muscle Leg	muscle
16	chr3:156347200-156348800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:156347200-156349000	Enhancers	Psoas Muscle	Psoas
18	chr3:156347200-156349200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:156347200-156349400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:156347200-156349600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:156347400-156348800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:156347600-156348600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:156347600-156349400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:156347600-156353800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:156347800-156348800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:156347800-156349200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:156347800-156349400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:156347800-156349400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:156347800-156349400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:156347800-156349400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:156347800-156350200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:156348000-156348600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:156348000-156348800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr3:156348000-156349000	Weak transcription	Esophagus	oesophagus
35	chr3:156348000-156349400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:156348000-156350800	Weak transcription	Left Ventricle	heart
37	chr3:156348200-156348600	Weak transcription	Right Atrium	heart
38	chr3:156348200-156349200	Enhancers	NH-A	brain
39	chr3:156348400-156348600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr3:156348400-156348800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr3:156348400-156349200	Enhancers	Fetal Kidney	kidney
42	chr3:156348400-156349400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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