Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156355072..156357150-chr3:156390850..156394545,3	MCF-7	breast:
2	chr3:156320945..156324067-chr3:156355856..156358815,3	K562	blood:
3	chr3:156355246..156356229-chr3:156530151..156531163,7	MCF-7	breast:
4	chr3:156259833..156260828-chr3:156355203..156356175,21	MCF-7	breast:
5	chr3:156259847..156260725-chr3:156355203..156356175,11	MCF-7	breast:
6	chr3:156346980..156348606-chr3:156355155..156357044,2	K562	blood:
7	chr3:156321168..156324067-chr3:156355856..156357983,2	K562	blood:
8	chr3:156355720..156357957-chr3:156372743..156375351,2	MCF-7	breast:
9	chr3:156336566..156339046-chr3:156355636..156358467,3	K562	blood:
10	chr3:156355156..156356223-chr3:156530151..156531163,9	MCF-7	breast:
11	chr3:156346319..156347875-chr3:156354876..156356759,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11710516	0.81[MKK][hapmap]
rs11926558	0.96[ASN][1000 genomes]
rs11926561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073605	0.96[ASN][1000 genomes]
rs1397193	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs182936	0.81[MKK][hapmap]
rs1858229	0.86[ASN][1000 genomes]
rs2292336	0.87[CEU][hapmap];0.92[TSI][hapmap]
rs344008	0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[AMR][1000 genomes]
rs4680296	0.87[ASN][1000 genomes]
rs4680298	0.83[CHD][hapmap]
rs4680299	0.83[CHD][hapmap]
rs6441088	0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6441089	0.96[ASN][1000 genomes]
rs6441092	0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs6799457	0.83[CHD][hapmap]
rs7636366	0.96[ASN][1000 genomes]
rs7651446	1.00[MEX][hapmap]
rs978108	0.83[CHD][hapmap]
rs9841047	0.96[ASN][1000 genomes]
rs985854	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
2	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156351800-156356600	Weak transcription	Osteobl	bone
4	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
5	chr3:156353200-156358800	Weak transcription	GM12878-XiMat	blood
6	chr3:156354400-156357000	Weak transcription	K562	blood
7	chr3:156354400-156359000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:156355200-156356200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:156355400-156356200	Enhancers	Colonic Mucosa	Colon
10	chr3:156355600-156356200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:156355800-156360200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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