Variant report

Variant	rs6441088
Chromosome Location	chr3:156363488-156363489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156360827..156364304-chr3:156391072..156393975,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11926558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926561	0.96[ASN][1000 genomes]
rs13073605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097957	0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1397193	0.84[ASN][1000 genomes]
rs1510270	0.83[LWK][hapmap]
rs1858229	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2136691	0.85[AMR][1000 genomes]
rs2136692	0.85[AMR][1000 genomes]
rs344009	0.83[LWK][hapmap]
rs344053	0.83[LWK][hapmap]
rs344061	0.83[LWK][hapmap]
rs427384	0.83[LWK][hapmap]
rs4680296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680297	0.85[AMR][1000 genomes]
rs4680298	0.83[LWK][hapmap];0.85[AMR][1000 genomes]
rs4680299	0.83[LWK][hapmap];0.85[AMR][1000 genomes]
rs5012666	0.85[AMR][1000 genomes]
rs6441089	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441092	0.83[LWK][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6441093	0.85[AMR][1000 genomes]
rs6441094	0.85[AMR][1000 genomes]
rs6441095	0.83[LWK][hapmap]
rs6799457	0.83[LWK][hapmap];0.85[AMR][1000 genomes]
rs7636366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640593	0.85[AMR][1000 genomes]
rs871232	0.85[AMR][1000 genomes]
rs871233	0.85[AMR][1000 genomes]
rs907063	0.85[AMR][1000 genomes]
rs931990	0.85[AMR][1000 genomes]
rs978108	0.83[LWK][hapmap]
rs9833951	0.85[AMR][1000 genomes]
rs9841047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985854	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877043	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
3	chr3:156360400-156363600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:156361600-156366000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:156361800-156365600	Weak transcription	HSMMtube	muscle
6	chr3:156362200-156365600	Weak transcription	Osteobl	bone
7	chr3:156362200-156367600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:156362400-156363800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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