Variant report

Variant	rs1510270
Chromosome Location	chr3:156391659-156391660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156391646-156392735	PANC-1	pancreas:	n/a	n/a
2	ZMIZ1	chr3:156391645-156392679	K562	blood:	n/a	n/a
3	FOXA1	chr3:156391645-156392432	HepG2	liver:	n/a	chr3:156391973-156391985
4	MAX	chr3:156391520-156392851	MCF-7	breast:	n/a	n/a
5	RCOR1	chr3:156391602-156392546	GM12878	blood:	n/a	n/a
6	MAX	chr3:156391469-156392784	MCF-7	breast:	n/a	n/a
7	POLR2A	chr3:156391542-156392766	H1-neurons	neurons:	n/a	n/a
8	POLR2A	chr3:156391392-156394830	MCF10A-Er-Src	breast:	n/a	n/a
9	MXI1	chr3:156391527-156396530	IMR90	lung:	n/a	n/a
10	RAD21	chr3:156391634-156392399	HepG2	liver:	n/a	chr3:156392246-156392256
11	POLR2A	chr3:156391586-156392716	H1-neurons	neurons:	n/a	n/a
12	EP300	chr3:156391632-156392443	MCF-7	breast:	n/a	n/a
13	CTCF	chr3:156391594-156393671	GM12878	blood:	n/a	chr3:156393431-156393449 chr3:156393432-156393448 chr3:156392243-156392256
14	SP1	chr3:156391619-156392643	A549	lung:	n/a	chr3:156392324-156392336 chr3:156392249-156392259 chr3:156392248-156392260 chr3:156392169-156392179 chr3:156392169-156392179 chr3:156392250-156392259 chr3:156392295-156392305 chr3:156392248-156392260
15	RELA	chr3:156391567-156392600	GM18505	blood:	n/a	n/a
16	TCF12	chr3:156391600-156392208	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr3:156391256-156394283	SK-N-SH	brain:	n/a	chr3:156392246-156392256 chr3:156393667-156393674
18	CTCF	chr3:156391539-156392326	A549	lung:	n/a	chr3:156392243-156392256
19	YY1	chr3:156391592-156392572	GM12878	blood:	n/a	chr3:156391875-156391886 chr3:156392315-156392329 chr3:156392439-156392448
20	POLR2A	chr3:156391537-156394159	HL-60	blood:	n/a	n/a
21	RCOR1	chr3:156391586-156392741	HepG2	liver:	n/a	n/a
22	STAT1	chr3:156391641-156392814	GM12878	blood:	n/a	n/a
23	POLR2A	chr3:156391538-156394475	Hela-S3	cervix:	n/a	n/a
24	MAZ	chr3:156391649-156392760	HepG2	liver:	n/a	n/a
25	CTCF	chr3:156391563-156392370	K562	blood:	n/a	chr3:156392243-156392256
26	YY1	chr3:156391569-156392660	GM12892	blood:	n/a	chr3:156391875-156391886 chr3:156392315-156392329 chr3:156392439-156392448
27	NFIC	chr3:156391565-156392636	GM12878	blood:	n/a	n/a
28	USF1	chr3:156391497-156392683	ECC-1	luminal epithelium:	n/a	n/a
29	TBL1XR1	chr3:156391655-156392591	K562	blood:	n/a	n/a
30	TEAD4	chr3:156391541-156392645	K562	blood:	n/a	n/a
31	USF1	chr3:156391596-156392563	A549	lung:	n/a	n/a
32	RCOR1	chr3:156391473-156392764	K562	blood:	n/a	n/a
33	REST	chr3:156391645-156392717	MCF-7	breast:	n/a	n/a
34	POLR2A	chr3:156391589-156393067	PBDE	blood:	n/a	n/a
35	BCLAF1	chr3:156391536-156392683	GM12878	blood:	n/a	chr3:156392440-156392449 chr3:156391838-156391851
36	CREB1	chr3:156391603-156392658	H1-hESC	embryonic stem cell:	n/a	n/a
37	TFAP2C	chr3:156391643-156394218	Hela-S3	cervix:	n/a	chr3:156393934-156393949
38	POLR2A	chr3:156391617-156393223	GM12891	blood:	n/a	n/a
39	GATA3	chr3:156391639-156392601	T-47D	breast:	n/a	n/a
40	TEAD4	chr3:156391637-156392232	K562	blood:	n/a	n/a
41	MAX	chr3:156391554-156393767	K562	blood:	n/a	chr3:156393246-156393256
42	IRF4	chr3:156391569-156392248	GM12878	blood:	n/a	n/a
43	CREB1	chr3:156391636-156393006	GM12878	blood:	n/a	n/a
44	RAD21	chr3:156391641-156392256	ECC-1	luminal epithelium:	n/a	chr3:156392246-156392256
45	POLR2A	chr3:156391630-156392773	K562	blood:	n/a	n/a
46	MAX	chr3:156391641-156392540	H1-hESC	embryonic stem cell:	n/a	n/a
47	RAD21	chr3:156391565-156392301	GM12878	blood:	n/a	chr3:156392246-156392256
48	POLR2A	chr3:156391582-156393028	HCT-116	colon:	n/a	n/a
49	STAT5A	chr3:156391495-156392571	K562	blood:	n/a	n/a
50	BCLAF1	chr3:156391534-156392646	GM12878	blood:	n/a	chr3:156392440-156392449 chr3:156391838-156391851

No.	Distal block	Cell Line	Cell type
1	chr3:156390449..156395705-chr3:156876136..156879645,10	MCF-7	breast:
2	chr3:156391507..156394071-chr3:156396999..156400389,4	MCF-7	breast:
3	chr3:156270771..156274735-chr3:156390391..156394038,18	K562	blood:
4	chr3:156390967..156393612-chr3:156877452..156879722,5	K562	blood:
5	chr3:156268357..156274553-chr3:156389283..156394606,15	MCF-7	breast:
6	chr3:156391432..156392673-chr3:156799216..156800183,12	MCF-7	breast:
7	chr3:156391537..156393857-chr3:156543728..156545632,2	K562	blood:
8	chr3:156389452..156396391-chr3:156801976..156809206,19	MCF-7	breast:
9	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
10	chr3:156391529..156394159-chr3:156805680..156808214,2	K562	blood:
11	chr12:92538568..92539165-chr3:156391568..156392141,2	Hela-S3	cervix:
12	chr3:156272378..156273447-chr3:156391539..156392497,3	NB4	blood:
13	chr3:156391446..156393768-chr3:156890974..156892598,2	MCF-7	breast:
14	chr3:156391356..156392486-chr3:156799238..156800133,4	K562	blood:
15	chr3:156269857..156276442-chr3:156389324..156394083,11	MCF-7	breast:
16	chr3:156391251..156395598-chr3:156875832..156879722,8	K562	blood:
17	chr3:156272675..156273484-chr3:156391601..156392336,4	MCF-7	breast:
18	chr3:156391202..156392503-chr3:156799357..156800312,5	MCF-7	breast:
19	chr3:156391482..156392232-chr7:10979248..10979918,2	HCT-116	colon:
20	chr3:156260735..156275674-chr3:156389736..156397850,44	K562	blood:
21	chr3:156389670..156395497-chr3:156530360..156537244,22	MCF-7	breast:
22	chr3:156390293..156396385-chr3:156542364..156548172,18	MCF-7	breast:
23	chr3:156390535..156395368-chr3:156542467..156546251,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-2	chr3:156391436-156391722	ENSG00000243926.1
2	lnc-SSR3-2	chr3:156390960-156393502	NONHSAT092861

Variant related genes	Relation type
TIPARP	TF binding region
TIPARP-AS1	TF binding region
ENSG00000163659	Chromatin interaction
ENSG00000241135	Chromatin interaction
ENSG00000189043	Chromatin interaction
ENSG00000114850	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000133639	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000241544	Chromatin interaction
ENSG00000230457	Chromatin interaction
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11710516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11927500	1.00[CHB][hapmap]
rs1355280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397194	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1397195	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1510269	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168245	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16826858	1.00[CHB][hapmap]
rs16826864	1.00[CHB][hapmap]
rs168295	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs171077	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs171080	1.00[CHB][hapmap]
rs180746	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs180747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs182935	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs184677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1858229	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs186928	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs193198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs193423	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2129909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2136691	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2136692	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs237245	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs237246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2633815	1.00[CHB][hapmap]
rs2665390	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];0.89[ASN][1000 genomes]
rs343991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343992	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs343995	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343996	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343997	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343998	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344000	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344001	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344008	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs344009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344023	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344029	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344032	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344047	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344048	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344049	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344050	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344053	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344061	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs344062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs344064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344074	1.00[CHB][hapmap]
rs344076	1.00[CHB][hapmap]
rs344078	1.00[CHB][hapmap]
rs344081	1.00[CHB][hapmap]
rs344083	1.00[CHB][hapmap]
rs344086	1.00[CHB][hapmap]
rs344090	1.00[CHB][hapmap]
rs344091	1.00[CHB][hapmap]
rs344092	1.00[CHB][hapmap]
rs345987	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs414683	1.00[CHB][hapmap]
rs419287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs427384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4279048	1.00[ASN][1000 genomes]
rs4429586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679784	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680297	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4680298	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4680299	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs491423	1.00[CHB][hapmap]
rs5012666	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6441088	0.83[LWK][hapmap]
rs6441092	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6441093	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6441094	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6441095	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441099	1.00[CHB][hapmap]
rs6441100	1.00[CHB][hapmap]
rs6786167	1.00[CHB][hapmap]
rs6799457	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7630909	1.00[CHB][hapmap]
rs7640593	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs871232	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs871233	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs907063	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs931990	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs978108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978109	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9833951	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9861359	1.00[CHB][hapmap]
rs9877043	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9878709	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156391000-156393000	Active TSS	Fetal Brain Male	brain
2	chr3:156391200-156392200	Flanking Active TSS	Dnd41	blood
3	chr3:156391200-156394000	Active TSS	Fetal Kidney	kidney
4	chr3:156391400-156391800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr3:156391400-156391800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr3:156391400-156391800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:156391400-156391800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:156391400-156391800	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr3:156391400-156391800	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr3:156391400-156391800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr3:156391400-156391800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:156391400-156391800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:156391400-156391800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr3:156391400-156391800	Flanking Active TSS	Hela-S3	cervix
15	chr3:156391400-156391800	Flanking Active TSS	HepG2	liver
16	chr3:156391400-156391800	Flanking Active TSS	K562	blood
17	chr3:156391400-156391800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr3:156391400-156391800	Flanking Active TSS	NHEK	skin
19	chr3:156391400-156392000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr3:156391400-156392000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr3:156391400-156392000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:156391400-156392000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:156391400-156392000	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr3:156391400-156392000	Flanking Active TSS	Fetal Intestine Small	intestine
25	chr3:156391400-156392400	Active TSS	Brain Germinal Matrix	brain
26	chr3:156391400-156393400	Active TSS	Fetal Brain Female	brain
27	chr3:156391400-156393600	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr3:156391400-156393600	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr3:156391400-156393800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:156391400-156393800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:156391400-156393800	Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr3:156391400-156393800	Active TSS	Brain Anterior Caudate	brain
33	chr3:156391400-156393800	Active TSS	Brain Hippocampus Middle	brain
34	chr3:156391400-156393800	Active TSS	Stomach Smooth Muscle	stomach
35	chr3:156391400-156394000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:156391400-156394000	Active TSS	Adipose Nuclei	Adipose
37	chr3:156391400-156394200	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr3:156391400-156394200	Active TSS	Osteobl	bone
39	chr3:156391400-156394600	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr3:156391400-156395000	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr3:156391400-156395000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr3:156391400-156395200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:156391400-156395200	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr3:156391400-156395200	Active TSS	Psoas Muscle	Psoas
45	chr3:156391600-156391800	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:156391600-156391800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr3:156391600-156391800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:156391600-156391800	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr3:156391600-156391800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr3:156391600-156391800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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Variant report

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