Variant report

Variant	rs344048
Chromosome Location	chr3:156479084-156479085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156478908..156481855-chr3:156482060..156485286,3	MCF-7	breast:
2	chr3:156476830..156479789-chr3:156862694..156865587,2	K562	blood:

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs11710516	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717138	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11927500	1.00[JPT][hapmap]
rs13321802	1.00[JPT][hapmap]
rs1355280	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1397194	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1397195	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1430412	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1510269	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1510270	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs168245	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16826858	1.00[JPT][hapmap]
rs16826864	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16826899	1.00[JPT][hapmap]
rs16826906	1.00[JPT][hapmap]
rs168295	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs171077	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171080	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs180746	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs180747	0.96[EUR][1000 genomes]
rs182935	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs182936	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184677	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1858229	0.83[EUR][1000 genomes]
rs186928	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs193423	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2054881	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2129909	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2136691	0.83[EUR][1000 genomes]
rs2136692	0.83[EUR][1000 genomes]
rs2163296	0.80[ASN][1000 genomes]
rs237245	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs237246	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2633815	1.00[JPT][hapmap]
rs2665390	0.89[ASN][1000 genomes]
rs28661978	0.83[ASN][1000 genomes]
rs2874490	1.00[JPT][hapmap]
rs2874491	1.00[JPT][hapmap]
rs343991	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs343992	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs343995	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs343996	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs343997	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs343998	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344000	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344001	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344005	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344006	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344008	0.89[ASN][1000 genomes]
rs344009	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344010	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344011	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344012	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344013	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344014	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344015	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344016	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344017	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344029	0.96[EUR][1000 genomes]
rs344032	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344052	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344053	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344054	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344055	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344058	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344059	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344060	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344061	0.96[EUR][1000 genomes]
rs344062	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344063	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs344064	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344065	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344066	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344068	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344069	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344070	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344076	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344077	0.83[ASN][1000 genomes]
rs344078	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344081	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344083	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344085	0.83[ASN][1000 genomes]
rs344086	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344088	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344090	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344091	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs344092	1.00[JPT][hapmap]
rs345987	0.83[ASN][1000 genomes]
rs3796172	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs414683	1.00[JPT][hapmap]
rs419287	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs427384	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4279048	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4429586	0.91[EUR][1000 genomes]
rs4679784	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680297	0.83[EUR][1000 genomes]
rs4680298	0.83[EUR][1000 genomes]
rs4680299	0.83[EUR][1000 genomes]
rs4680304	0.89[ASN][1000 genomes]
rs491423	1.00[JPT][hapmap]
rs5012666	0.83[EUR][1000 genomes]
rs59244547	0.83[ASN][1000 genomes]
rs6441092	0.83[EUR][1000 genomes]
rs6441093	0.83[EUR][1000 genomes]
rs6441094	0.83[EUR][1000 genomes]
rs6441095	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6441099	1.00[JPT][hapmap]
rs6441100	1.00[JPT][hapmap]
rs6763644	1.00[JPT][hapmap]
rs6786167	1.00[JPT][hapmap]
rs6787535	1.00[JPT][hapmap]
rs6787952	1.00[JPT][hapmap]
rs6792917	1.00[JPT][hapmap]
rs6795327	1.00[JPT][hapmap]
rs6795516	1.00[JPT][hapmap]
rs6799457	0.83[EUR][1000 genomes]
rs6802042	1.00[JPT][hapmap]
rs6802511	1.00[JPT][hapmap]
rs7609851	1.00[JPT][hapmap]
rs7618306	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7630909	1.00[JPT][hapmap]
rs7635521	1.00[JPT][hapmap]
rs7640593	0.83[EUR][1000 genomes]
rs7650127	1.00[JPT][hapmap]
rs871233	0.83[EUR][1000 genomes]
rs931990	0.83[EUR][1000 genomes]
rs978108	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs978109	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9823112	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9833951	0.83[EUR][1000 genomes]
rs9847692	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9861359	1.00[JPT][hapmap]
rs9877043	0.83[EUR][1000 genomes]
rs9878709	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156477800-156479400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:156477800-156481000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:156477800-156481200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156477800-156481200	Enhancers	NHEK	skin
5	chr3:156478000-156479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:156478000-156479200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:156478000-156479200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156478000-156479200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:156478000-156480000	Enhancers	NHDF-Ad	bronchial
10	chr3:156478000-156481000	Enhancers	HMEC	breast
11	chr3:156478000-156482200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:156478000-156483400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156478000-156483800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:156478200-156479200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:156478200-156479200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:156478200-156479200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:156478200-156479200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:156478200-156479200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:156478200-156479400	Enhancers	Fetal Muscle Leg	muscle
20	chr3:156478200-156480200	Enhancers	K562	blood
21	chr3:156478200-156481000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:156478200-156481000	Enhancers	HSMM	muscle
23	chr3:156478200-156481200	Enhancers	Osteobl	bone
24	chr3:156478200-156483600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:156478400-156479200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:156478400-156479400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:156478400-156481000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:156478400-156481000	Enhancers	HSMMtube	muscle
29	chr3:156478600-156479600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:156478600-156479800	Weak transcription	Fetal Kidney	kidney
31	chr3:156478800-156479400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:156478800-156480600	Enhancers	Brain Substantia Nigra	brain
33	chr3:156478800-156481000	Enhancers	Rectal Smooth Muscle	rectum
34	chr3:156478800-156481200	Enhancers	Fetal Stomach	stomach
35	chr3:156479000-156479200	Enhancers	NH-A	brain
36	chr3:156479000-156479400	Enhancers	GM12878-XiMat	blood
37	chr3:156479000-156480000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:156479000-156480000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:156479000-156480000	Weak transcription	Fetal Lung	lung
40	chr3:156479000-156480000	Weak transcription	Psoas Muscle	Psoas
41	chr3:156479000-156480000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links