Variant report

Variant	rs2163296
Chromosome Location	chr3:156518435-156518436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156487668..156490241-chr3:156516348..156519090,2	K562	blood:
2	chr3:156517343..156519280-chr3:156530527..156533564,3	MCF-7	breast:
3	chr3:156517394..156521071-chr3:156534029..156536553,4	MCF-7	breast:
4	chr3:156498174..156501165-chr3:156515710..156519959,5	K562	blood:
5	chr3:156515993..156518701-chr3:156522150..156523774,2	K562	blood:
6	chr3:156517713..156521186-chr3:156527728..156530502,3	MCF-7	breast:
7	chr3:156517201..156520390-chr3:156522150..156525155,3	K562	blood:
8	chr3:156516553..156518826-chr3:156527961..156530378,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11710516	0.80[ASN][1000 genomes]
rs11717138	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1430412	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs171077	0.80[ASN][1000 genomes]
rs180746	0.80[ASN][1000 genomes]
rs182936	0.80[ASN][1000 genomes]
rs237246	0.80[ASN][1000 genomes]
rs343992	0.85[ASN][1000 genomes]
rs344023	0.80[ASN][1000 genomes]
rs344030	0.81[AMR][1000 genomes]
rs344047	0.80[ASN][1000 genomes]
rs344048	0.80[ASN][1000 genomes]
rs344049	0.80[ASN][1000 genomes]
rs344050	0.80[ASN][1000 genomes]
rs3796172	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680304	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7618306	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7634472	0.90[EUR][1000 genomes]
rs9847692	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156502800-156528400	Weak transcription	Esophagus	oesophagus
2	chr3:156502800-156529000	Weak transcription	Liver	Liver
3	chr3:156511000-156519600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156511200-156529000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:156511400-156518800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:156511400-156530400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:156511600-156519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156514000-156519600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:156514400-156525400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:156514400-156525800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:156517400-156529000	Weak transcription	A549	lung
12	chr3:156517600-156518600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:156518000-156519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:156518000-156519600	Strong transcription	NHEK	skin
15	chr3:156518000-156524800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156518000-156529800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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