Variant report

Variant	rs344030
Chromosome Location	chr3:156464729-156464730
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1430412	0.89[AMR][1000 genomes]
rs171079	0.87[EUR][1000 genomes]
rs2163296	0.81[AMR][1000 genomes]
rs344019	0.83[EUR][1000 genomes]
rs344024	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs344051	0.87[EUR][1000 genomes]
rs4637242	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4680304	0.86[AMR][1000 genomes]
rs6781237	0.83[EUR][1000 genomes]
rs7618306	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156447800-156465000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156460000-156465600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:156460000-156468400	Weak transcription	Pancreas	Pancrea
6	chr3:156462000-156466600	Weak transcription	Right Atrium	heart
7	chr3:156462200-156467000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:156462800-156464800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:156464200-156465400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156464200-156465800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:156464400-156464800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156464400-156466400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156464600-156464800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:156464600-156465400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:156464600-156465600	ZNF genes & repeats	NHEK	skin
16	chr3:156464600-156468000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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