Variant report

Variant	rs6781237
Chromosome Location	chr3:156484222-156484223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs171079	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs193196	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34354387	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343993	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344022	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344024	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344030	0.83[EUR][1000 genomes]
rs344051	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637242	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614210	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs88053	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156481000-156485400	Weak transcription	HSMMtube	muscle
2	chr3:156481000-156490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156481000-156490600	Weak transcription	NH-A	brain
4	chr3:156482200-156487200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156483200-156488000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:156483400-156486800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:156483400-156487200	Weak transcription	NHDF-Ad	bronchial
8	chr3:156483400-156487200	Weak transcription	Osteobl	bone
9	chr3:156483400-156487400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156483400-156487600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:156483400-156487600	Weak transcription	NHEK	skin
12	chr3:156483400-156487800	Weak transcription	HMEC	breast
13	chr3:156483400-156490400	Weak transcription	HUVEC	blood vessel
14	chr3:156483600-156487600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:156483600-156487600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:156483600-156490200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:156483600-156490600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:156483800-156487200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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