Variant report

Variant	rs344017
Chromosome Location	chr3:156415002-156415003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156413591..156415384-chr3:156421420..156423521,2	K562	blood:
2	chr3:156414309..156416118-chr3:156532502..156534838,2	MCF-7	breast:
3	chr3:156401966..156404393-chr3:156414302..156416945,2	K562	blood:

Variant related genes	Relation type
ENSG00000240875	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs11710516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11927500	1.00[CHB][hapmap]
rs13321802	1.00[CHB][hapmap]
rs1355280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1397194	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397195	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510269	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1510270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs168245	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16826858	1.00[CHB][hapmap]
rs16826864	1.00[CHB][hapmap]
rs16826899	1.00[CHB][hapmap]
rs168295	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs171077	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs171080	1.00[CHB][hapmap]
rs180746	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs180747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs182935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs182936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs184677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858229	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs186928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs193198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs193423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136691	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2136692	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs237245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2633815	1.00[CHB][hapmap]
rs2665390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs343991	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs343992	1.00[CHB][hapmap]
rs343995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs344009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344023	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs344032	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344047	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344048	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344049	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344050	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs344062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs344064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344074	1.00[CHB][hapmap]
rs344076	1.00[CHB][hapmap]
rs344078	1.00[CHB][hapmap]
rs344081	1.00[CHB][hapmap]
rs344083	1.00[CHB][hapmap]
rs344086	1.00[CHB][hapmap]
rs344090	1.00[CHB][hapmap]
rs344091	1.00[CHB][hapmap]
rs344092	1.00[CHB][hapmap]
rs345987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs414683	1.00[CHB][hapmap]
rs419287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4279048	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4429586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4679784	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680297	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4680298	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4680299	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs491423	1.00[CHB][hapmap]
rs5012666	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6441089	0.83[AMR][1000 genomes]
rs6441092	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6441093	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6441094	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6441095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441099	1.00[CHB][hapmap]
rs6441100	1.00[CHB][hapmap]
rs6786167	1.00[CHB][hapmap]
rs6787535	1.00[CHB][hapmap]
rs6787952	1.00[CHB][hapmap]
rs6799457	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630909	1.00[CHB][hapmap]
rs7640593	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs871232	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs871233	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs907063	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs931990	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs978108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs978109	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9823112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833951	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9861359	1.00[CHB][hapmap]
rs9877043	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9878709	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:156396600-156441000	Weak transcription	Lung	lung
5	chr3:156403400-156421800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:156407800-156419600	Weak transcription	Esophagus	oesophagus
7	chr3:156407800-156422000	Weak transcription	Fetal Brain Female	brain
8	chr3:156407800-156423800	Weak transcription	Spleen	Spleen
9	chr3:156407800-156424000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:156407800-156428200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:156409000-156429800	Weak transcription	Gastric	stomach
12	chr3:156409200-156422000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:156409200-156425400	Weak transcription	Colonic Mucosa	Colon
14	chr3:156409400-156422200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:156409400-156425600	Weak transcription	Fetal Brain Male	brain
16	chr3:156409600-156422400	Weak transcription	Fetal Stomach	stomach
17	chr3:156410000-156420400	Weak transcription	Fetal Intestine Small	intestine
18	chr3:156410000-156427400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:156411000-156416800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:156411000-156424200	Genic enhancers	Muscle Satellite Cultured Cells	--
21	chr3:156411200-156415200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:156411200-156416800	Strong transcription	K562	blood
23	chr3:156411200-156417000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:156411200-156419000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr3:156411400-156415200	Genic enhancers	Osteobl	bone
26	chr3:156411400-156415600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:156411400-156416800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:156411400-156417000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:156411400-156417200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:156411400-156417200	Strong transcription	Fetal Thymus	thymus
31	chr3:156411400-156417200	Strong transcription	Dnd41	blood
32	chr3:156411400-156417200	Strong transcription	HepG2	liver
33	chr3:156411400-156417400	Strong transcription	Primary B cells from cord blood	blood
34	chr3:156411400-156419200	Strong transcription	Fetal Intestine Large	intestine
35	chr3:156411400-156419800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:156411400-156426000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:156411600-156415200	Strong transcription	Primary hematopoietic stem cells	blood
38	chr3:156411600-156416800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:156411600-156417400	Strong transcription	Left Ventricle	heart
40	chr3:156411600-156419200	Strong transcription	GM12878-XiMat	blood
41	chr3:156411600-156419600	Strong transcription	Primary T cells from cord blood	blood
42	chr3:156411600-156422200	Weak transcription	Stomach Mucosa	stomach
43	chr3:156411600-156426000	Strong transcription	HSMMtube	muscle
44	chr3:156411600-156429000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:156411800-156415400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:156411800-156415600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:156411800-156416600	Strong transcription	Adipose Nuclei	Adipose
48	chr3:156411800-156416800	Strong transcription	Psoas Muscle	Psoas
49	chr3:156411800-156417200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:156411800-156417400	Strong transcription	Primary B cells from peripheral blood	blood

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