Variant report

Variant	rs6799457
Chromosome Location	chr3:156381837-156381838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156377079..156379353-chr3:156380561..156383322,2	K562	blood:
2	chr3:156271840..156274505-chr3:156381741..156384652,3	K562	blood:
3	chr3:156272045..156274505-chr3:156381741..156383798,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11710516	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11926558	0.85[AMR][1000 genomes]
rs13073605	0.85[AMR][1000 genomes]
rs13097957	0.83[CHD][hapmap]
rs1355280	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1397194	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1397195	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1430412	0.83[CHD][hapmap]
rs1510269	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1510270	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs168245	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16826858	0.83[CHD][hapmap]
rs168295	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs180746	0.83[EUR][1000 genomes]
rs180747	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs182935	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs182936	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs184677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1858229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs186928	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs193198	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs193423	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2054881	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2129909	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2136691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs237245	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs237246	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2665390	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap]
rs343991	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs343992	0.83[CHD][hapmap]
rs343995	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs343996	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs343997	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs343998	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344000	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344001	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344005	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344006	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs344008	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs344009	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344010	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344011	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344012	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344013	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344014	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344015	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344017	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344023	0.83[EUR][1000 genomes]
rs344029	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344032	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs344047	0.83[EUR][1000 genomes]
rs344048	0.83[EUR][1000 genomes]
rs344049	0.83[EUR][1000 genomes]
rs344050	0.83[EUR][1000 genomes]
rs344052	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344053	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344054	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344055	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344058	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344059	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs344060	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344061	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344062	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344063	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs344064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344065	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344066	1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344068	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344069	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344070	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs344076	0.83[CHD][hapmap]
rs344081	0.83[CHD][hapmap]
rs344088	0.83[CHD][hapmap]
rs344090	0.83[CHD][hapmap]
rs345987	0.83[AMR][1000 genomes]
rs414683	0.83[CHD][hapmap]
rs419287	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs427384	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4429586	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4679784	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680296	0.85[AMR][1000 genomes]
rs4680297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491423	0.83[CHD][hapmap]
rs5012666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441088	0.83[LWK][hapmap];0.85[AMR][1000 genomes]
rs6441089	1.00[AMR][1000 genomes]
rs6441092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6441093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441095	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7618306	0.83[CHD][hapmap]
rs7636366	0.85[AMR][1000 genomes]
rs7640593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978108	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs978109	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9823112	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9833951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841047	0.85[AMR][1000 genomes]
rs9847692	0.83[CHD][hapmap]
rs985854	0.85[AMR][1000 genomes]
rs9877043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156376600-156382400	Weak transcription	Fetal Kidney	kidney
2	chr3:156376600-156383800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:156376600-156385600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:156377400-156382200	Weak transcription	HSMMtube	muscle
5	chr3:156377400-156386000	Weak transcription	Psoas Muscle	Psoas
6	chr3:156377600-156382200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:156377600-156382200	Weak transcription	Brain Germinal Matrix	brain
8	chr3:156377600-156383000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:156379400-156382000	Weak transcription	Primary B cells from cord blood	blood
10	chr3:156380600-156384200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:156381200-156382200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:156381200-156382400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:156381200-156384000	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:156381400-156382000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:156381400-156382200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:156381400-156382200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:156381400-156382200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:156381400-156383400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:156381400-156383600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr3:156381400-156384200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:156381600-156382200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:156381600-156382400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr3:156381600-156382400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:156381600-156382400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr3:156381600-156383600	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:156381600-156383800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:156381600-156384400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:156381800-156382000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr3:156381800-156383200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr3:156381800-156383600	Flanking Active TSS	GM12878-XiMat	blood
31	chr3:156381800-156383800	Enhancers	K562	blood

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