Variant report

Variant	rs11926558
Chromosome Location	chr3:156357319-156357320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156320945..156324067-chr3:156355856..156358815,3	K562	blood:
2	chr3:156321168..156324067-chr3:156355856..156357983,2	K562	blood:
3	chr3:156355720..156357957-chr3:156372743..156375351,2	MCF-7	breast:
4	chr3:156336566..156339046-chr3:156355636..156358467,3	K562	blood:
5	chr3:156356830..156359467-chr3:156364600..156367515,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11926561	0.96[ASN][1000 genomes]
rs13073605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097957	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1397193	0.84[ASN][1000 genomes]
rs1858229	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2136691	0.85[AMR][1000 genomes]
rs2136692	0.85[AMR][1000 genomes]
rs4680296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680297	0.85[AMR][1000 genomes]
rs4680298	0.85[AMR][1000 genomes]
rs4680299	0.85[AMR][1000 genomes]
rs5012666	0.85[AMR][1000 genomes]
rs6441088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441089	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441092	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6441093	0.85[AMR][1000 genomes]
rs6441094	0.85[AMR][1000 genomes]
rs6799457	0.85[AMR][1000 genomes]
rs7636366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640593	0.85[AMR][1000 genomes]
rs871232	0.85[AMR][1000 genomes]
rs871233	0.85[AMR][1000 genomes]
rs907063	0.85[AMR][1000 genomes]
rs931990	0.85[AMR][1000 genomes]
rs9833951	0.85[AMR][1000 genomes]
rs9841047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985854	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877043	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
2	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
4	chr3:156353200-156358800	Weak transcription	GM12878-XiMat	blood
5	chr3:156354400-156359000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:156355800-156360200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:156356200-156361200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:156356200-156361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:156357000-156357400	Enhancers	K562	blood

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