Variant report

Variant	rs1397193
Chromosome Location	chr3:156359280-156359281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11926558	0.84[ASN][1000 genomes]
rs11926561	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13073605	0.84[ASN][1000 genomes]
rs13097957	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6441088	0.84[ASN][1000 genomes]
rs6441089	0.84[ASN][1000 genomes]
rs7636366	0.84[ASN][1000 genomes]
rs9841047	0.84[ASN][1000 genomes]
rs985854	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
2	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
4	chr3:156355800-156360200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:156356200-156361200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:156356200-156361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156357400-156360600	Weak transcription	K562	blood
9	chr3:156358800-156361200	Enhancers	GM12878-XiMat	blood
10	chr3:156359000-156360000	Enhancers	Fetal Heart	heart
11	chr3:156359000-156360000	Enhancers	Psoas Muscle	Psoas
12	chr3:156359000-156360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:156359000-156360600	Weak transcription	Osteobl	bone
14	chr3:156359000-156361400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:156359000-156362000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:156359200-156360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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