Variant report

Variant	rs6441089
Chromosome Location	chr3:156365744-156365745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156356830..156359467-chr3:156364600..156367515,2	K562	blood:
2	chr3:156364332..156366414-chr3:156385028..156387855,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11926558	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926561	0.96[ASN][1000 genomes]
rs13073605	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097957	0.96[ASN][1000 genomes]
rs1355280	0.83[AMR][1000 genomes]
rs1397193	0.84[ASN][1000 genomes]
rs1397194	0.83[AMR][1000 genomes]
rs1397195	0.83[AMR][1000 genomes]
rs1510269	0.83[AMR][1000 genomes]
rs168245	0.83[AMR][1000 genomes]
rs168295	0.83[AMR][1000 genomes]
rs180747	0.83[AMR][1000 genomes]
rs182935	0.83[AMR][1000 genomes]
rs184677	0.83[AMR][1000 genomes]
rs1858229	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs186928	0.83[AMR][1000 genomes]
rs193423	0.83[AMR][1000 genomes]
rs2054881	0.83[AMR][1000 genomes]
rs2129909	0.83[AMR][1000 genomes]
rs2136691	1.00[AMR][1000 genomes]
rs2136692	1.00[AMR][1000 genomes]
rs2292336	1.00[JPT][hapmap]
rs237245	0.83[AMR][1000 genomes]
rs343991	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs343995	0.83[AMR][1000 genomes]
rs343996	0.83[AMR][1000 genomes]
rs343997	0.83[AMR][1000 genomes]
rs343998	0.83[AMR][1000 genomes]
rs344000	0.83[AMR][1000 genomes]
rs344001	0.83[AMR][1000 genomes]
rs344005	0.83[AMR][1000 genomes]
rs344009	0.83[AMR][1000 genomes]
rs344010	0.83[AMR][1000 genomes]
rs344011	0.83[AMR][1000 genomes]
rs344012	0.83[AMR][1000 genomes]
rs344013	0.83[AMR][1000 genomes]
rs344014	0.83[AMR][1000 genomes]
rs344015	0.83[AMR][1000 genomes]
rs344016	0.83[AMR][1000 genomes]
rs344017	0.83[AMR][1000 genomes]
rs344029	0.83[AMR][1000 genomes]
rs344032	0.83[AMR][1000 genomes]
rs344052	0.83[AMR][1000 genomes]
rs344053	0.83[AMR][1000 genomes]
rs344054	0.83[AMR][1000 genomes]
rs344055	0.83[AMR][1000 genomes]
rs344058	0.83[AMR][1000 genomes]
rs344059	0.83[AMR][1000 genomes]
rs344060	0.83[AMR][1000 genomes]
rs344061	0.83[AMR][1000 genomes]
rs344062	0.83[AMR][1000 genomes]
rs344063	0.83[AMR][1000 genomes]
rs344064	0.83[AMR][1000 genomes]
rs344065	0.83[AMR][1000 genomes]
rs344066	0.83[AMR][1000 genomes]
rs344068	0.83[AMR][1000 genomes]
rs344069	0.83[AMR][1000 genomes]
rs344070	0.83[AMR][1000 genomes]
rs345987	0.83[AMR][1000 genomes]
rs419287	0.83[AMR][1000 genomes]
rs427384	0.83[AMR][1000 genomes]
rs4679784	0.83[AMR][1000 genomes]
rs4680296	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680297	1.00[AMR][1000 genomes]
rs4680298	1.00[AMR][1000 genomes]
rs4680299	1.00[AMR][1000 genomes]
rs5012666	1.00[AMR][1000 genomes]
rs6441088	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441092	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6441093	1.00[AMR][1000 genomes]
rs6441094	1.00[AMR][1000 genomes]
rs6441095	0.83[AMR][1000 genomes]
rs6799457	1.00[AMR][1000 genomes]
rs7636366	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640593	1.00[AMR][1000 genomes]
rs871232	1.00[AMR][1000 genomes]
rs871233	1.00[AMR][1000 genomes]
rs907063	1.00[AMR][1000 genomes]
rs931990	1.00[AMR][1000 genomes]
rs978108	0.83[AMR][1000 genomes]
rs978109	0.83[AMR][1000 genomes]
rs9823112	0.83[AMR][1000 genomes]
rs9833951	1.00[AMR][1000 genomes]
rs9841047	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985854	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877043	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
3	chr3:156361600-156366000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156362200-156367600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:156362800-156367600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:156365600-156366000	Enhancers	HSMMtube	muscle
8	chr3:156365600-156366000	Enhancers	Osteobl	bone
9	chr3:156365600-156366400	Enhancers	Muscle Satellite Cultured Cells	--

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