Variant report

Variant	rs168295
Chromosome Location	chr3:156397167-156397168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156396908-156397648	IMR90	lung:	n/a	n/a
2	POLR2A	chr3:156397028-156397625	K562	blood:	n/a	n/a
3	CHD1	chr3:156391341-156402336	IMR90	lung:	n/a	chr3:156392500-156392510
4	POLR2A	chr3:156397069-156404423	A549	lung:	n/a	n/a
5	POLR2A	chr3:156397116-156397768	Hela-S3	cervix:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156254673..156257232-chr3:156395894..156398875,3	K562	blood:
2	chr3:156394981..156397696-chr3:156877359..156880145,3	MCF-7	breast:
3	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
4	chr3:156391507..156394071-chr3:156396999..156400389,4	MCF-7	breast:
5	chr3:156260735..156275674-chr3:156389736..156397850,44	K562	blood:

No data

Variant related genes	Relation type
TIPARP-AS1	TF binding region
TIPARP	TF binding region
ENSG00000163660	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000230457	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11710516	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1397194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1397195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1510269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1510270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs168245	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171077	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs180746	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs180747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs182935	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs182936	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs184677	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1858229	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs186928	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs193423	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054881	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2129909	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2136691	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2136692	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs237245	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs237246	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2665390	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs343991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343995	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs343996	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs343997	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs343998	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344000	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344001	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344005	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344006	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344008	0.95[ASN][1000 genomes]
rs344009	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344010	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344011	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344013	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344014	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344016	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344017	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344023	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344029	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344032	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344047	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344048	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344049	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344050	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs344052	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344053	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344054	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344055	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344058	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344059	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344060	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344061	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344062	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344063	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs344064	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344065	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344066	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344068	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344069	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344070	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs345987	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs419287	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs427384	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4279048	0.94[ASN][1000 genomes]
rs4429586	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4679784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680297	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680298	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680299	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5012666	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441089	0.83[AMR][1000 genomes]
rs6441092	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441093	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441094	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799457	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7640593	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs871232	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs871233	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs907063	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs931990	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs978108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs978109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9823112	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9833951	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9877043	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156393000-156398800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:156393600-156401800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
3	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156394200-156412600	Weak transcription	Placenta	Placenta
5	chr3:156394400-156398800	Weak transcription	Aorta	Aorta
6	chr3:156394400-156404800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:156394400-156411800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:156394600-156402200	Enhancers	Fetal Heart	heart
9	chr3:156394600-156402800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:156394800-156400600	Genic enhancers	K562	blood
11	chr3:156394800-156403000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:156395000-156398400	Weak transcription	Fetal Brain Male	brain
13	chr3:156395000-156400800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:156395200-156397400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:156395200-156397600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:156395200-156398000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:156395200-156398200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:156395200-156398400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:156395200-156398600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:156395400-156397400	Genic enhancers	Brain Anterior Caudate	brain
21	chr3:156395400-156397600	Strong transcription	Primary B cells from cord blood	blood
22	chr3:156395400-156397600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
23	chr3:156395400-156397600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:156395400-156397600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
25	chr3:156395400-156397800	Genic enhancers	Duodenum Mucosa	Duodenum
26	chr3:156395400-156397800	Transcr. at gene 5' and 3'	NH-A	brain
27	chr3:156395400-156398800	Transcr. at gene 5' and 3'	HMEC	breast
28	chr3:156395400-156399000	Genic enhancers	HepG2	liver
29	chr3:156395400-156399200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
30	chr3:156395400-156400000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:156395400-156400000	Genic enhancers	Liver	Liver
32	chr3:156395400-156401400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:156395400-156402800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
34	chr3:156395600-156397600	Genic enhancers	Colon Smooth Muscle	Colon
35	chr3:156395600-156397600	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr3:156395600-156397600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr3:156395600-156397800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:156395600-156398000	Strong transcription	Fetal Intestine Large	intestine
39	chr3:156395600-156398200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:156395600-156398400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr3:156395600-156398600	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:156395600-156399200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:156395600-156399800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:156395600-156399800	Strong transcription	Fetal Thymus	thymus
45	chr3:156395600-156400000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:156395600-156401800	Genic enhancers	HUVEC	blood vessel
47	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:156395800-156397400	Strong transcription	Fetal Kidney	kidney
49	chr3:156395800-156397400	Strong transcription	Fetal Lung	lung
50	chr3:156395800-156397600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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