Variant report

Variant	rs4279048
Chromosome Location	chr3:156458713-156458714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156455142..156458106-chr3:156458193..156461275,4	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11710516	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1355280	1.00[ASN][1000 genomes]
rs1397194	0.94[ASN][1000 genomes]
rs1397195	0.94[ASN][1000 genomes]
rs1510269	1.00[ASN][1000 genomes]
rs1510270	1.00[ASN][1000 genomes]
rs168245	0.94[ASN][1000 genomes]
rs168295	0.94[ASN][1000 genomes]
rs171077	0.88[ASN][1000 genomes]
rs180746	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs180747	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs182935	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182936	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs184677	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs186928	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs193423	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054881	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2129909	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs237245	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs237246	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2665390	0.89[ASN][1000 genomes]
rs343991	0.94[ASN][1000 genomes]
rs343992	0.83[ASN][1000 genomes]
rs343995	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343996	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343997	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343998	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344000	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344001	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344005	0.94[ASN][1000 genomes]
rs344006	0.94[ASN][1000 genomes]
rs344008	0.89[ASN][1000 genomes]
rs344009	0.94[ASN][1000 genomes]
rs344010	0.94[ASN][1000 genomes]
rs344011	0.94[ASN][1000 genomes]
rs344012	0.94[ASN][1000 genomes]
rs344013	0.94[ASN][1000 genomes]
rs344014	0.94[ASN][1000 genomes]
rs344015	0.94[ASN][1000 genomes]
rs344016	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344017	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344023	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344029	0.85[EUR][1000 genomes]
rs344032	0.94[ASN][1000 genomes]
rs344047	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344048	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344049	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344050	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344052	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344053	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344054	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344055	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344058	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344059	0.94[ASN][1000 genomes]
rs344060	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344061	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs344062	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344063	0.85[ASN][1000 genomes]
rs344064	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344065	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344066	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344068	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344069	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs344070	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs345987	0.94[ASN][1000 genomes]
rs419287	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs427384	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4429586	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679784	1.00[ASN][1000 genomes]
rs6441095	1.00[ASN][1000 genomes]
rs978108	1.00[ASN][1000 genomes]
rs978109	1.00[ASN][1000 genomes]
rs9823112	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156445600-156459600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:156446400-156464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:156447800-156464200	Weak transcription	HSMM	muscle
5	chr3:156447800-156464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:156447800-156465000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:156448200-156462800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:156448200-156464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156448400-156464600	Weak transcription	NHEK	skin
11	chr3:156450400-156459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156450800-156461600	Weak transcription	HepG2	liver
13	chr3:156456000-156461800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:156457000-156459400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:156457600-156460000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156457800-156459000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:156458600-156459800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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