Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210565121..210568359-chr1:210572172..210574144,3	K562	blood:
2	chr1:210545087..210549192-chr1:210563139..210569683,17	K562	blood:
3	chr1:210566042..210569012-chr1:210569613..210571239,2	MCF-7	breast:
4	chr1:210546871..210548760-chr1:210563708..210566553,2	MCF-7	breast:
5	chr1:210557280..210560870-chr1:210565323..210568970,3	MCF-7	breast:
6	chr1:210544279..210546668-chr1:210563649..210566448,3	MCF-7	breast:
7	chr1:210565840..210568269-chr1:210585284..210587364,2	K562	blood:
8	chr1:210544272..210548756-chr1:210564899..210569569,12	MCF-7	breast:
9	chr1:210560782..210563745-chr1:210565066..210566906,2	MCF-7	breast:
10	chr1:210566055..210568677-chr1:210572512..210575312,3	MCF-7	breast:
11	chr1:210526031..210527804-chr1:210564982..210566537,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10489387	0.84[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs11119480	0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1883655	0.83[CHB][hapmap]
rs2066721	0.85[EUR][1000 genomes]
rs2103691	0.84[CHB][hapmap]
rs2294847	0.84[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs2294848	0.84[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs3765864	0.97[ASN][1000 genomes]
rs3765867	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3765868	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3765873	0.84[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3765880	0.83[CHB][hapmap]
rs3819987	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4336853	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4844522	0.82[EUR][1000 genomes]
rs4845010	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6540590	0.87[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6540591	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs761170	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs761172	0.84[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs910028	0.84[EUR][1000 genomes]
rs910033	0.86[EUR][1000 genomes]
rs926581	0.81[JPT][hapmap]
rs9970232	0.84[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210546600-210566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:210548600-210566400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210551200-210566600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
7	chr1:210560200-210566800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:210562400-210566400	Weak transcription	Left Ventricle	heart
9	chr1:210563400-210569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:210565200-210569600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:210565400-210566400	Enhancers	HSMM	muscle
12	chr1:210565800-210566200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:210566000-210569000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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