Variant report

Variant	rs4845010
Chromosome Location	chr1:210565133-210565134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210565121..210568359-chr1:210572172..210574144,3	K562	blood:
2	chr1:210545087..210549192-chr1:210563139..210569683,17	K562	blood:
3	chr1:210546871..210548760-chr1:210563708..210566553,2	MCF-7	breast:
4	chr1:210544279..210546668-chr1:210563649..210566448,3	MCF-7	breast:
5	chr1:210544272..210548756-chr1:210564899..210569569,12	MCF-7	breast:
6	chr1:210560782..210563745-chr1:210565066..210566906,2	MCF-7	breast:
7	chr1:210526031..210527804-chr1:210564982..210566537,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10489387	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.84[EUR][1000 genomes]
rs11119480	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1883655	0.80[CHB][hapmap]
rs2066721	0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs2103691	0.81[CHB][hapmap]
rs2143441	0.89[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2294844	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2294847	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs2294848	0.85[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs3765864	0.98[ASN][1000 genomes]
rs3765867	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3765868	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3765873	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3765880	0.80[CHB][hapmap]
rs3819987	0.85[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4336853	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4844522	0.80[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs6540590	0.81[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6540591	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs761170	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761172	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[EUR][1000 genomes]
rs910028	0.84[EUR][1000 genomes]
rs910033	0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs926581	0.86[JPT][hapmap]
rs9970232	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4845010	HHAT	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210538400-210565600	Weak transcription	Esophagus	oesophagus
3	chr1:210543200-210565200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:210546600-210566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:210548600-210566400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:210551200-210566600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
9	chr1:210559200-210565400	Weak transcription	HSMM	muscle
10	chr1:210560200-210566800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:210562400-210566400	Weak transcription	Left Ventricle	heart
12	chr1:210563400-210569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:210564800-210565800	Enhancers	Muscle Satellite Cultured Cells	--

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