Variant report

Variant	rs229605
Chromosome Location	chr14:65160046-65160047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64969883..64973217-chr14:65158643..65161451,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs179336	0.87[CHD][hapmap]
rs229606	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs229676	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4899143	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs229605	ZBTB25	cis	parietal	SCAN
rs229605	VTI1B	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65153000-65160200	Weak transcription	Placenta	Placenta
3	chr14:65155400-65160800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:65155600-65165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65155800-65163000	Weak transcription	Lung	lung
6	chr14:65156000-65160400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:65156000-65163000	Weak transcription	Pancreas	Pancrea
8	chr14:65156000-65165000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:65156000-65165200	Weak transcription	Fetal Thymus	thymus
10	chr14:65156400-65160600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:65156600-65162800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:65156800-65161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:65156800-65162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:65156800-65162800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:65156800-65162800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:65156800-65163000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:65157800-65161400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:65158800-65160200	Enhancers	NHEK	skin
19	chr14:65158800-65164600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr14:65159000-65160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:65159000-65160800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr14:65159000-65161000	Enhancers	Right Ventricle	heart
23	chr14:65159000-65161000	Enhancers	Spleen	Spleen
24	chr14:65159000-65161600	Enhancers	Fetal Muscle Leg	muscle
25	chr14:65159000-65161600	Enhancers	Left Ventricle	heart
26	chr14:65159000-65161800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:65159000-65161800	Enhancers	Right Atrium	heart
28	chr14:65159000-65162000	Enhancers	Brain Angular Gyrus	brain
29	chr14:65159000-65162000	Enhancers	Brain Anterior Caudate	brain
30	chr14:65159000-65162000	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:65159000-65162000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr14:65159000-65162400	Enhancers	Brain Substantia Nigra	brain
33	chr14:65159000-65166000	Enhancers	Brain Hippocampus Middle	brain
34	chr14:65159200-65161800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr14:65159200-65161800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:65159200-65163000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr14:65159200-65163600	Enhancers	Fetal Heart	heart
38	chr14:65159400-65160800	Weak transcription	Fetal Intestine Small	intestine
39	chr14:65159400-65161000	Enhancers	Adipose Nuclei	Adipose
40	chr14:65159600-65160400	Enhancers	Fetal Kidney	kidney
41	chr14:65159600-65160600	Enhancers	Colon Smooth Muscle	Colon
42	chr14:65159600-65160800	Enhancers	Primary B cells from cord blood	blood
43	chr14:65159600-65161000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:65159600-65161200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr14:65159600-65161200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr14:65159600-65161400	Enhancers	Psoas Muscle	Psoas
47	chr14:65159600-65163000	Weak transcription	Colonic Mucosa	Colon
48	chr14:65159800-65160400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr14:65159800-65161000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:65159800-65163000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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