Variant report

Variant	rs229676
Chromosome Location	chr14:65155270-65155271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65148833..65151255-chr14:65153026..65155458,2	K562	blood:
2	chr14:65150365..65152992-chr14:65154794..65157024,2	MCF-7	breast:
3	chr14:65154137..65157295-chr14:65167882..65171071,3	MCF-7	breast:
4	chr14:65154198..65155893-chr14:65160507..65162048,2	K562	blood:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs106111	0.91[JPT][hapmap]
rs179336	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs229605	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs229606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs229621	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65159000	Weak transcription	Right Atrium	heart
2	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:65149600-65159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:65150200-65159000	Weak transcription	Right Ventricle	heart
5	chr14:65151200-65159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:65152400-65159200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:65152800-65159000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:65153000-65155600	Weak transcription	Fetal Thymus	thymus
9	chr14:65153000-65159000	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:65153000-65160200	Weak transcription	Placenta	Placenta
11	chr14:65153200-65155600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:65153200-65159000	Weak transcription	Brain Angular Gyrus	brain
13	chr14:65153800-65156800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:65154000-65156800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:65154200-65156000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
16	chr14:65154200-65156200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr14:65154200-65156400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr14:65154200-65156800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr14:65154400-65156000	Enhancers	Primary hematopoietic stem cells	blood
20	chr14:65154400-65156800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:65154400-65156800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:65154400-65156800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:65154600-65156200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:65154800-65156000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
25	chr14:65154800-65156200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:65154800-65156200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr14:65154800-65156800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:65154800-65157000	Enhancers	Fetal Intestine Small	intestine
29	chr14:65155000-65155400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:65155000-65155600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:65155000-65155600	Weak transcription	Lung	lung
32	chr14:65155000-65156000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:65155000-65156000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:65155000-65156000	Enhancers	Duodenum Mucosa	Duodenum
35	chr14:65155000-65156000	Enhancers	Spleen	Spleen
36	chr14:65155000-65156200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
37	chr14:65155000-65156200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:65155000-65156200	Enhancers	HMEC	breast
39	chr14:65155000-65156400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr14:65155000-65156400	Enhancers	Primary T cells from cord blood	blood
41	chr14:65155000-65156600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:65155000-65156600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr14:65155000-65156600	Enhancers	Stomach Mucosa	stomach
44	chr14:65155000-65156800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr14:65155000-65157000	Enhancers	Fetal Intestine Large	intestine
46	chr14:65155200-65155400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:65155200-65155600	Bivalent Enhancer	NHEK	skin
48	chr14:65155200-65155800	Enhancers	Colonic Mucosa	Colon
49	chr14:65155200-65156000	Enhancers	Primary B cells from cord blood	blood
50	chr14:65155200-65156000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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