Variant report

Variant	rs2296136
Chromosome Location	chr10:5929962-5929963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr10:5929938-5933656	SK-N-SH	brain:	n/a	n/a
2	ZNF263	chr10:5929832-5932287	HEK293-T-REx	kidney:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5904346..5907644-chr10:5928919..5931742,3	MCF-7	breast:
2	chr10:5725094..5729377-chr10:5927689..5933777,6	MCF-7	breast:
3	chr10:5853532..5857435-chr10:5928623..5934190,13	MCF-7	breast:
4	chr10:5852595..5861125-chr10:5921136..5936216,31	MCF-7	breast:
5	chr10:5929157..5931311-chr10:6018059..6019673,2	MCF-7	breast:
6	chr10:5853820..5856785-chr10:5927225..5934067,15	K562	blood:
7	chr10:5853439..5857708-chr10:5926443..5936823,24	K562	blood:

No data

Variant related genes	Relation type
FBXO18	TF binding region
ANKRD16	TF binding region
ENSG00000134470	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000272764	Chromatin interaction
ENSG00000240180	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11592964	1.00[AFR][1000 genomes]
rs11594153	1.00[AFR][1000 genomes]
rs11594794	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11595457	1.00[AFR][1000 genomes]
rs11598581	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11598865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813102	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1512694	0.85[JPT][hapmap]
rs17146333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17146580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17146587	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17146629	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2031230	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2137422	1.00[AFR][1000 genomes]
rs2274026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2274027	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2274028	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274031	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274033	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296137	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296138	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34249852	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34455477	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3750656	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3750659	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41290311	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41306916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4330991	0.82[JPT][hapmap]
rs4749325	1.00[AFR][1000 genomes]
rs4749407	1.00[AFR][1000 genomes]
rs55718140	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56103646	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56213022	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56296494	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56333805	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56354230	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs61834499	0.89[ASN][1000 genomes]
rs6602312	0.85[JPT][hapmap]
rs6602322	0.85[JPT][hapmap]
rs7893821	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7899635	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7899847	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7902223	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7904512	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7904712	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7907053	0.85[JPT][hapmap]
rs7912210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7913876	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918162	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7919410	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7919785	0.85[JPT][hapmap]
rs7923781	0.82[JPT][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv466723	chr10:5920836-5930579	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv549905	chr10:5920836-5930579	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	nsv466724	chr10:5920836-5938544	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
10	nsv549906	chr10:5920836-5938544	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5915600-5930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr10:5915600-5930000	Weak transcription	HUVEC	blood vessel
3	chr10:5915800-5930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:5915800-5930200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:5916600-5930600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:5916800-5930200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:5918000-5930000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:5918200-5930200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:5919200-5930000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:5920200-5930600	Weak transcription	Aorta	Aorta
11	chr10:5920400-5930000	Weak transcription	Hela-S3	cervix
12	chr10:5924200-5930000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:5924200-5930000	Strong transcription	Primary T cells from cord blood	blood
14	chr10:5924400-5930400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:5926000-5930000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:5926200-5930000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:5926400-5930200	Weak transcription	Fetal Kidney	kidney
18	chr10:5927000-5930000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:5927000-5930200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:5927000-5930400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:5927000-5930400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:5927200-5930000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:5927800-5930200	Weak transcription	Thymus	Thymus
24	chr10:5928000-5930000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:5928000-5930000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:5928000-5930000	Weak transcription	Adipose Nuclei	Adipose
27	chr10:5928000-5930000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:5928000-5930200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:5928200-5930000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:5928200-5930000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:5928200-5930000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:5928200-5930000	Weak transcription	NH-A	brain
33	chr10:5928200-5930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:5928200-5930200	Weak transcription	HSMM	muscle
35	chr10:5928200-5930200	Weak transcription	Osteobl	bone
36	chr10:5928200-5930400	Weak transcription	HSMMtube	muscle
37	chr10:5928400-5930000	Weak transcription	Fetal Thymus	thymus
38	chr10:5928400-5930000	Weak transcription	A549	lung
39	chr10:5928400-5930600	Enhancers	Small Intestine	intestine
40	chr10:5928600-5930000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:5928600-5930200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:5929000-5930200	Enhancers	Liver	Liver
43	chr10:5929000-5930200	Genic enhancers	K562	blood
44	chr10:5929200-5930000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:5929200-5930000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:5929200-5930000	Enhancers	Brain Germinal Matrix	brain
47	chr10:5929200-5930000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr10:5929200-5930000	Enhancers	Colon Smooth Muscle	Colon
49	chr10:5929200-5930000	Enhancers	Duodenum Mucosa	Duodenum
50	chr10:5929200-5930000	Weak transcription	Rectal Smooth Muscle	rectum

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