Variant report

Variant	rs55718140
Chromosome Location	chr10:5900452-5900453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5850597..5853484-chr10:5898526..5901196,3	K562	blood:
2	chr10:5850597..5856224-chr10:5899689..5902412,5	K562	blood:

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10795590	0.83[ASN][1000 genomes]
rs10795591	0.83[ASN][1000 genomes]
rs10795593	0.83[ASN][1000 genomes]
rs10795595	0.83[ASN][1000 genomes]
rs10795596	0.83[ASN][1000 genomes]
rs10905299	0.83[ASN][1000 genomes]
rs10905302	0.83[ASN][1000 genomes]
rs10905303	0.83[ASN][1000 genomes]
rs10905307	0.83[ASN][1000 genomes]
rs10905316	0.83[ASN][1000 genomes]
rs11255549	0.83[ASN][1000 genomes]
rs11255555	0.83[ASN][1000 genomes]
rs11255558	0.83[ASN][1000 genomes]
rs11255577	0.83[ASN][1000 genomes]
rs11255581	0.83[ASN][1000 genomes]
rs11592964	1.00[AFR][1000 genomes]
rs11594153	1.00[AFR][1000 genomes]
rs11595457	1.00[AFR][1000 genomes]
rs11598581	0.90[EUR][1000 genomes]
rs11598865	0.90[EUR][1000 genomes]
rs11813102	0.84[EUR][1000 genomes]
rs12250878	0.83[ASN][1000 genomes]
rs12255077	0.81[ASN][1000 genomes]
rs12774966	0.81[ASN][1000 genomes]
rs12784539	0.81[ASN][1000 genomes]
rs17146333	0.87[EUR][1000 genomes]
rs17146580	0.80[EUR][1000 genomes]
rs17146587	0.80[EUR][1000 genomes]
rs17146629	0.80[EUR][1000 genomes]
rs2031230	0.81[EUR][1000 genomes]
rs2137422	1.00[AFR][1000 genomes]
rs2137423	0.84[ASN][1000 genomes]
rs2274026	0.83[EUR][1000 genomes]
rs2274028	0.87[EUR][1000 genomes]
rs2274031	0.80[EUR][1000 genomes]
rs2274033	0.80[EUR][1000 genomes]
rs2296136	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2296137	0.90[EUR][1000 genomes]
rs2296138	0.90[EUR][1000 genomes]
rs2380200	0.83[ASN][1000 genomes]
rs2380205	0.83[ASN][1000 genomes]
rs2380208	0.83[ASN][1000 genomes]
rs34249852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34455477	0.93[EUR][1000 genomes]
rs3750656	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3750659	0.97[EUR][1000 genomes]
rs3954757	0.83[ASN][1000 genomes]
rs4009521	0.83[ASN][1000 genomes]
rs41290311	0.90[EUR][1000 genomes]
rs41306916	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4256891	0.83[ASN][1000 genomes]
rs4282894	0.83[ASN][1000 genomes]
rs4282899	0.82[ASN][1000 genomes]
rs4287254	0.83[ASN][1000 genomes]
rs4293038	0.83[ASN][1000 genomes]
rs4301704	0.83[ASN][1000 genomes]
rs4330991	0.84[ASN][1000 genomes]
rs4421659	0.81[ASN][1000 genomes]
rs4428973	0.83[ASN][1000 genomes]
rs4468244	0.81[ASN][1000 genomes]
rs4497300	0.83[ASN][1000 genomes]
rs4749325	1.00[AFR][1000 genomes]
rs4749407	1.00[AFR][1000 genomes]
rs56103646	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56213022	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56296494	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56333805	0.90[EUR][1000 genomes]
rs56354230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7072174	0.83[ASN][1000 genomes]
rs7099029	0.83[ASN][1000 genomes]
rs713588	0.83[ASN][1000 genomes]
rs7893821	0.80[EUR][1000 genomes]
rs7894083	0.83[ASN][1000 genomes]
rs7894559	0.83[ASN][1000 genomes]
rs7897260	0.83[ASN][1000 genomes]
rs7898042	0.83[ASN][1000 genomes]
rs7898059	0.83[ASN][1000 genomes]
rs7899847	0.90[EUR][1000 genomes]
rs7901964	0.83[ASN][1000 genomes]
rs7902205	0.83[ASN][1000 genomes]
rs7902223	0.90[EUR][1000 genomes]
rs7903875	0.83[ASN][1000 genomes]
rs7904512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7904712	0.87[EUR][1000 genomes]
rs7907795	0.83[ASN][1000 genomes]
rs7907914	0.83[ASN][1000 genomes]
rs7908028	0.83[ASN][1000 genomes]
rs7912210	0.90[EUR][1000 genomes]
rs7919044	0.83[ASN][1000 genomes]
rs7923278	0.83[ASN][1000 genomes]
rs7923781	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs867052	0.83[ASN][1000 genomes]
rs907685	0.83[ASN][1000 genomes]
rs907686	0.83[ASN][1000 genomes]
rs907688	0.83[ASN][1000 genomes]
rs907689	0.83[ASN][1000 genomes]
rs9663995	0.81[ASN][1000 genomes]
rs9732607	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3342274	chr10:5875995-5901345	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv466722	chr10:5893268-5916201	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv549904	chr10:5893268-5916201	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5888800-5904400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:5889400-5902000	Weak transcription	Placenta	Placenta
3	chr10:5894600-5908600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:5894600-5908600	Weak transcription	K562	blood
5	chr10:5894600-5916800	Weak transcription	Spleen	Spleen
6	chr10:5896200-5912200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:5896400-5918200	Weak transcription	Fetal Lung	lung
8	chr10:5896600-5902000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:5896600-5903800	Weak transcription	Fetal Stomach	stomach
10	chr10:5897000-5903800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:5898400-5901000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:5899000-5904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:5899200-5903000	Weak transcription	HepG2	liver
14	chr10:5899800-5900800	Enhancers	Brain Anterior Caudate	brain
15	chr10:5899800-5900800	Enhancers	Brain Substantia Nigra	brain
16	chr10:5899800-5901200	Enhancers	Brain Angular Gyrus	brain
17	chr10:5899800-5901400	Enhancers	Brain Hippocampus Middle	brain
18	chr10:5899800-5904200	Weak transcription	Ovary	ovary
19	chr10:5899800-5905000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:5900000-5900800	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:5900000-5904000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:5900000-5916600	Weak transcription	Pancreas	Pancrea
23	chr10:5900400-5900600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr10:5900400-5901200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:5900400-5901800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:5900400-5916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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