Variant report

Variant	rs2296325
Chromosome Location	chr14:65414379-65414380
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:65414056-65414508	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:65414261-65414585	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr14:65414319-65414490	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr14:65414377-65414674	H1-neurons	neurons:	n/a	n/a
5	POLR2A	chr14:65414364-65414402	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65411390..65415173-chr14:65438187..65441044,4	MCF-7	breast:
2	chr14:65380997..65384717-chr14:65414191..65417570,3	MCF-7	breast:
3	chr14:65409377..65412312-chr14:65414249..65416827,3	K562	blood:
4	chr14:65408459..65411716-chr14:65412606..65416966,4	MCF-7	breast:
5	chr14:65409377..65412312-chr14:65414249..65416590,2	K562	blood:

No data

Variant related genes	Relation type
GPX2	TF binding region
ENSG00000125954	Chromatin interaction
ENSG00000139998	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000176153	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2412105	0.82[ASN][1000 genomes]
rs2412106	0.85[ASN][1000 genomes]
rs34852276	0.88[ASN][1000 genomes]
rs4899155	0.86[ASN][1000 genomes]
rs59000318	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60979440	0.80[ASN][1000 genomes]
rs7143541	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7359095	0.89[ASN][1000 genomes]
rs8007405	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2296325	RAB15	Cis_1M	lymphoblastoid	RTeQTL
rs2296325	CHURC1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
3	chr14:65383000-65419400	Weak transcription	K562	blood
4	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:65399000-65428000	Weak transcription	NHLF	lung
7	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
10	chr14:65401600-65435000	Weak transcription	NH-A	brain
11	chr14:65402400-65415000	Weak transcription	Osteobl	bone
12	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
13	chr14:65404400-65415000	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:65404400-65416600	Weak transcription	Psoas Muscle	Psoas
15	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:65404600-65414600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:65404600-65415600	Weak transcription	Fetal Heart	heart
18	chr14:65404600-65418200	Weak transcription	Brain Angular Gyrus	brain
19	chr14:65404600-65419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:65404800-65415000	Weak transcription	Ovary	ovary
21	chr14:65405000-65417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:65405800-65416200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:65406400-65415600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:65406600-65438000	Weak transcription	Fetal Kidney	kidney
25	chr14:65407400-65414800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:65407400-65415200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:65407600-65414600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:65407800-65417400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:65408400-65415400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:65409200-65416000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr14:65409600-65428400	Strong transcription	Fetal Stomach	stomach
32	chr14:65409800-65415200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr14:65410000-65414400	Weak transcription	Aorta	Aorta
34	chr14:65410000-65414800	Enhancers	HepG2	liver
35	chr14:65410000-65417000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:65410000-65418200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:65410200-65425200	Weak transcription	HMEC	breast
38	chr14:65410400-65415400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:65410400-65418200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:65410400-65419200	Strong transcription	Lung	lung
41	chr14:65410400-65425400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:65410600-65421600	Weak transcription	Pancreas	Pancrea
43	chr14:65410800-65414600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:65411000-65414600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:65411000-65414600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:65411000-65417600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr14:65411000-65423200	Weak transcription	NHEK	skin
48	chr14:65411000-65437200	Weak transcription	Fetal Lung	lung
49	chr14:65411200-65414400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:65411200-65414400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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