Variant report

Variant	rs60979440
Chromosome Location	chr14:65390231-65390232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr14:65390148-65390321	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65388523..65390556-chr14:65459399..65461527,2	MCF-7	breast:
2	chr14:65380332..65384001-chr14:65388831..65392561,3	K562	blood:
3	chr14:65380579..65384480-chr14:65390113..65394782,6	MCF-7	breast:

Variant related genes	Relation type
CHURC1-FNTB	TF binding region
CHURC1	TF binding region
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1467569	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467570	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467571	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1467573	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17102320	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1951490	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1951491	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1951492	0.89[ASN][1000 genomes]
rs1957427	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957428	0.90[ASN][1000 genomes]
rs1957429	0.90[ASN][1000 genomes]
rs1957431	0.90[ASN][1000 genomes]
rs1957432	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957434	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957435	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957436	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1998333	0.90[ASN][1000 genomes]
rs2296325	0.80[ASN][1000 genomes]
rs28370916	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2884308	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3813421	0.85[ASN][1000 genomes]
rs3813422	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3813423	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4899150	0.82[ASN][1000 genomes]
rs4902327	0.86[ASN][1000 genomes]
rs55983720	0.98[AFR][1000 genomes]
rs59000318	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59876171	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573583	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7141985	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7143541	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7143661	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8008745	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8009510	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8009996	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8013772	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9783609	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382200-65390800	Weak transcription	Placenta	Placenta
4	chr14:65382200-65391200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:65382200-65391600	Weak transcription	Ovary	ovary
6	chr14:65382200-65394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65382200-65395600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65382400-65390600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:65382400-65390600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65382400-65390600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:65382400-65390600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:65382400-65390600	Weak transcription	Fetal Intestine Large	intestine
13	chr14:65382400-65390800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:65382400-65390800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:65382400-65391000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:65382400-65391200	Weak transcription	Fetal Brain Female	brain
17	chr14:65382400-65391400	Weak transcription	Colonic Mucosa	Colon
18	chr14:65382400-65391600	Weak transcription	Fetal Stomach	stomach
19	chr14:65382400-65394000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
23	chr14:65382600-65391200	Weak transcription	Fetal Kidney	kidney
24	chr14:65382800-65390600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:65382800-65390600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr14:65382800-65390600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:65382800-65390600	Weak transcription	Fetal Muscle Leg	muscle
28	chr14:65382800-65390800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:65382800-65390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:65382800-65390800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:65382800-65390800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:65382800-65390800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr14:65382800-65390800	Weak transcription	NH-A	brain
34	chr14:65382800-65391000	Weak transcription	Brain Germinal Matrix	brain
35	chr14:65382800-65391200	Weak transcription	Brain Substantia Nigra	brain
36	chr14:65382800-65391400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr14:65382800-65392000	Weak transcription	Fetal Intestine Small	intestine
38	chr14:65382800-65393000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:65382800-65393000	Weak transcription	Right Ventricle	heart
40	chr14:65382800-65393000	Weak transcription	NHLF	lung
41	chr14:65382800-65394400	Weak transcription	Small Intestine	intestine
42	chr14:65382800-65394600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
44	chr14:65383000-65390400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:65383000-65390600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:65383000-65390600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:65383000-65390600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr14:65383000-65390800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:65383000-65390800	Weak transcription	Colon Smooth Muscle	Colon
50	chr14:65383000-65390800	Weak transcription	Hela-S3	cervix

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