Variant report

Variant	rs55983720
Chromosome Location	chr14:65397857-65397858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65395801..65398640-chr14:65409977..65412797,2	K562	blood:
2	chr14:65392028..65393873-chr14:65397382..65399258,2	K562	blood:
3	chr14:65379584..65383779-chr14:65391377..65398715,8	MCF-7	breast:
4	chr14:65380964..65382777-chr14:65396306..65398912,2	MCF-7	breast:
5	chr14:65390108..65393668-chr14:65396173..65398724,3	MCF-7	breast:
6	chr14:65394304..65397990-chr14:65402248..65406876,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1003370	0.83[ASN][1000 genomes]
rs1122339	0.84[ASN][1000 genomes]
rs11844283	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12147448	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17093568	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17102320	0.98[AFR][1000 genomes]
rs1951489	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957420	0.80[ASN][1000 genomes]
rs1957422	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957430	0.84[ASN][1000 genomes]
rs1957433	0.84[ASN][1000 genomes]
rs1983769	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2016653	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2104170	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35179634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3813424	0.83[ASN][1000 genomes]
rs4899151	0.84[ASN][1000 genomes]
rs58989463	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59876171	0.98[AFR][1000 genomes]
rs60979440	0.98[AFR][1000 genomes]
rs6573584	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7143661	0.94[AFR][1000 genomes]
rs7149446	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7158624	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625650	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8008229	0.84[ASN][1000 genomes]
rs8013371	0.83[ASN][1000 genomes]
rs8022462	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
6	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
7	chr14:65383000-65419400	Weak transcription	K562	blood
8	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:65384400-65404800	Weak transcription	Gastric	stomach
10	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:65390200-65399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:65390400-65398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:65390600-65398000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65390600-65400400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:65390600-65400600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:65390600-65401800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr14:65390800-65401200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:65390800-65401400	Strong transcription	Placenta	Placenta
21	chr14:65390800-65401600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:65390800-65401800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:65390800-65402400	Strong transcription	Osteobl	bone
24	chr14:65390800-65403200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:65390800-65407000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr14:65391800-65400600	Strong transcription	A549	lung
27	chr14:65392800-65401600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:65393000-65398200	Strong transcription	Lung	lung
29	chr14:65393200-65398200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr14:65393400-65400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:65393400-65400800	Weak transcription	Ovary	ovary
32	chr14:65393400-65404000	Weak transcription	Right Ventricle	heart
33	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:65393800-65398800	Weak transcription	Left Ventricle	heart
35	chr14:65393800-65404600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:65393800-65409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:65394200-65403600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:65395000-65398600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:65395200-65398000	Weak transcription	Colonic Mucosa	Colon
40	chr14:65395200-65398800	Weak transcription	Brain Germinal Matrix	brain
41	chr14:65395400-65404600	Weak transcription	Fetal Intestine Small	intestine
42	chr14:65395600-65398200	Weak transcription	HUVEC	blood vessel
43	chr14:65395600-65402600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:65395600-65403800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:65395800-65402200	Weak transcription	Psoas Muscle	Psoas
46	chr14:65395800-65402800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr14:65396000-65398200	Genic enhancers	Primary T cells fromperipheralblood	blood
48	chr14:65396000-65398200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr14:65396000-65398800	Weak transcription	Fetal Kidney	kidney
50	chr14:65396000-65400800	Weak transcription	Brain Hippocampus Middle	brain

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