Variant report

Variant	rs1957422
Chromosome Location	chr14:65360358-65360359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65264347..65266634-chr14:65358841..65360422,2	MCF-7	breast:
2	chr14:65360076..65361766-chr14:65362287..65363875,2	MCF-7	breast:
3	chr14:65358336..65361161-chr14:65365213..65366947,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1003370	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10151551	0.82[EUR][1000 genomes]
rs10162522	0.82[EUR][1000 genomes]
rs1122339	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11844283	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147448	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17093568	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1951489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957420	0.84[ASN][1000 genomes]
rs1957430	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1957433	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983769	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2104170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs230721	0.82[EUR][1000 genomes]
rs230722	0.82[EUR][1000 genomes]
rs2884307	0.82[ASN][1000 genomes]
rs35179634	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs368818	0.82[EUR][1000 genomes]
rs374461	0.82[EUR][1000 genomes]
rs375797	0.82[EUR][1000 genomes]
rs3813424	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs389370	0.82[EUR][1000 genomes]
rs395112	0.82[EUR][1000 genomes]
rs397901	0.82[EUR][1000 genomes]
rs399508	0.82[EUR][1000 genomes]
rs406811	0.82[EUR][1000 genomes]
rs424222	0.82[EUR][1000 genomes]
rs426044	0.82[EUR][1000 genomes]
rs435006	0.82[EUR][1000 genomes]
rs4899151	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902323	0.82[EUR][1000 genomes]
rs55983720	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58989463	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61989891	0.82[EUR][1000 genomes]
rs6573584	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7149121	0.82[EUR][1000 genomes]
rs7149446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625650	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs762072	0.82[EUR][1000 genomes]
rs8008229	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8013371	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022462	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9323455	0.82[EUR][1000 genomes]
rs9323456	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv510638	chr14:65353025-65368298	Enhancers Bivalent Enhancer Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv993830	chr14:65357515-65363884	Enhancers Weak transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3530154	chr14:65360044-65363951	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv9140	chr14:65360143-65363797	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3391571	chr14:65360199-65364497	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv512363	chr14:65360222-65363601	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3530153	chr14:65360263-65363644	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3443608	chr14:65360286-65363621	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3523216	chr14:65360292-65363649	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3523214	chr14:65360312-65363577	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3530157	chr14:65360318-65363613	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3530156	chr14:65360326-65363624	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3523215	chr14:65360328-65363590	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3530152	chr14:65360332-65363568	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3523217	chr14:65360339-65363588	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3324101	chr14:65360348-65363560	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65358600-65368000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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