Variant report

Variant	rs17093568
Chromosome Location	chr14:65409989-65409990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr14:65409362-65410001	HepG2	liver:	n/a	n/a
2	TCF12	chr14:65408664-65410141	A549	lung:	n/a	n/a
3	SP1	chr14:65409113-65409991	A549	lung:	n/a	chr14:65409510-65409524 chr14:65409664-65409673 chr14:65409663-65409672 chr14:65409887-65409901 chr14:65409663-65409672
4	POLR2A	chr14:65409043-65410029	HepG2	liver:	n/a	n/a
5	MYBL2	chr14:65409269-65410054	HepG2	liver:	n/a	n/a
6	RCOR1	chr14:65409288-65410006	HepG2	liver:	n/a	n/a
7	EP300	chr14:65409115-65410041	A549	lung:	n/a	n/a
8	ZEB1	chr14:65409093-65410065	HepG2	liver:	n/a	n/a
9	POLR2A	chr14:65409058-65413386	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65407129..65411344-chr14:65424634..65427852,4	MCF-7	breast:
2	chr14:65395801..65398640-chr14:65409977..65412797,2	K562	blood:
3	chr14:65409807..65412168-chr14:65438533..65440170,2	MCF-7	breast:
4	chr14:65408375..65411114-chr14:65437552..65439159,4	MCF-7	breast:
5	chr14:65379820..65382321-chr14:65409596..65411872,2	MCF-7	breast:
6	chr14:65380406..65382948-chr14:65406634..65410888,4	MCF-7	breast:
7	chr14:65409026..65413439-chr14:65416032..65420633,4	MCF-7	breast:

Variant related genes	Relation type
GPX2	TF binding region
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction
ENSG00000139998	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1003370	0.81[ASN][1000 genomes]
rs1122339	0.82[ASN][1000 genomes]
rs11844283	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12147448	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1951489	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957422	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957430	0.82[ASN][1000 genomes]
rs1957433	0.82[ASN][1000 genomes]
rs1983769	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2016653	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2104170	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35179634	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813424	0.81[ASN][1000 genomes]
rs4899151	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55983720	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58989463	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573584	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7149446	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7158624	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72625650	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008229	0.82[ASN][1000 genomes]
rs8013371	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8022462	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
3	chr14:65383000-65419400	Weak transcription	K562	blood
4	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
7	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65397400-65411200	Strong transcription	Dnd41	blood
9	chr14:65399000-65428000	Weak transcription	NHLF	lung
10	chr14:65399200-65412400	Weak transcription	Brain Germinal Matrix	brain
11	chr14:65400000-65410400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:65400800-65410200	Weak transcription	Fetal Lung	lung
15	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
16	chr14:65401600-65412400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:65401600-65413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:65401600-65435000	Weak transcription	NH-A	brain
19	chr14:65401800-65412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:65402400-65415000	Weak transcription	Osteobl	bone
21	chr14:65402600-65410200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr14:65403000-65412800	Strong transcription	Thymus	Thymus
23	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
24	chr14:65404000-65410600	Enhancers	Pancreas	Pancrea
25	chr14:65404000-65412200	Strong transcription	Fetal Thymus	thymus
26	chr14:65404400-65410200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:65404400-65410400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:65404400-65414200	Weak transcription	Right Ventricle	heart
29	chr14:65404400-65415000	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:65404400-65416600	Weak transcription	Psoas Muscle	Psoas
31	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:65404600-65410400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:65404600-65410600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:65404600-65412200	Weak transcription	Brain Anterior Caudate	brain
35	chr14:65404600-65413400	Weak transcription	HSMMtube	muscle
36	chr14:65404600-65414600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:65404600-65415600	Weak transcription	Fetal Heart	heart
38	chr14:65404600-65418200	Weak transcription	Brain Angular Gyrus	brain
39	chr14:65404600-65419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr14:65404800-65415000	Weak transcription	Ovary	ovary
41	chr14:65405000-65417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:65405200-65410400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:65405400-65410000	Strong transcription	Aorta	Aorta
44	chr14:65405400-65413200	Strong transcription	Stomach Smooth Muscle	stomach
45	chr14:65405600-65410200	Strong transcription	Fetal Muscle Leg	muscle
46	chr14:65405800-65416200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:65406000-65413000	Strong transcription	Adipose Nuclei	Adipose
48	chr14:65406200-65410000	Active TSS	Rectal Smooth Muscle	rectum
49	chr14:65406200-65410200	Weak transcription	Lung	lung
50	chr14:65406200-65411000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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