Variant report

Variant	rs1957430
Chromosome Location	chr14:65353506-65353507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65353028..65355615-chr14:65356230..65358479,2	K562	blood:
2	chr14:65346800..65348898-chr14:65351625..65354536,2	K562	blood:
3	chr14:65352038..65354745-chr14:65354823..65356401,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1003370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10151551	0.97[EUR][1000 genomes]
rs10162522	0.97[EUR][1000 genomes]
rs1122339	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844283	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12147448	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12433745	1.00[CHB][hapmap]
rs17093568	0.82[ASN][1000 genomes]
rs1951489	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1957422	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1957433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983769	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2016653	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2104170	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2269305	1.00[CHB][hapmap]
rs229598	1.00[CHB][hapmap]
rs230721	0.97[EUR][1000 genomes]
rs230722	0.97[EUR][1000 genomes]
rs2884307	0.93[ASN][1000 genomes]
rs368818	0.97[EUR][1000 genomes]
rs374461	0.97[EUR][1000 genomes]
rs375797	0.97[EUR][1000 genomes]
rs378391	0.91[EUR][1000 genomes]
rs3813424	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs389370	0.97[EUR][1000 genomes]
rs395112	0.97[EUR][1000 genomes]
rs397901	0.97[EUR][1000 genomes]
rs399508	0.97[EUR][1000 genomes]
rs406811	0.97[EUR][1000 genomes]
rs424222	0.97[EUR][1000 genomes]
rs426044	0.97[EUR][1000 genomes]
rs435006	0.97[EUR][1000 genomes]
rs4899144	1.00[CHB][hapmap]
rs4899145	1.00[CHB][hapmap]
rs4899151	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902309	1.00[CHB][hapmap]
rs4902310	1.00[CHB][hapmap]
rs4902312	1.00[CHB][hapmap]
rs4902323	0.97[EUR][1000 genomes]
rs4902324	0.94[EUR][1000 genomes]
rs55983720	0.84[ASN][1000 genomes]
rs58989463	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61989891	0.97[EUR][1000 genomes]
rs6573584	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7141792	1.00[CHB][hapmap]
rs7141985	0.87[AFR][1000 genomes]
rs7149121	0.97[EUR][1000 genomes]
rs7149446	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7157684	1.00[CHB][hapmap]
rs7158624	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7158780	1.00[CHB][hapmap]
rs762072	0.97[EUR][1000 genomes]
rs8008229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013371	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022462	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs911002	1.00[CHB][hapmap]
rs9323455	0.97[EUR][1000 genomes]
rs9323456	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv510638	chr14:65353025-65368298	Enhancers Bivalent Enhancer Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65353400-65357400	Weak transcription	K562	blood

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