Variant report

Variant	rs6573584
Chromosome Location	chr14:65373489-65373490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65373381..65376070-chr14:65381167..65383917,2	MCF-7	breast:
2	chr14:65371374..65373964-chr14:65403837..65405514,2	MCF-7	breast:
3	chr14:65373180..65376214-chr14:65389660..65391976,3	K562	blood:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1003370	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10151551	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs10162522	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs1122339	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11844283	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12147448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17093568	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17102320	0.80[CHB][hapmap]
rs1951489	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957420	0.83[ASN][1000 genomes]
rs1957422	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957430	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1957433	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1983769	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2016653	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs230721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes]
rs230722	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs2884307	0.81[ASN][1000 genomes]
rs35179634	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs368818	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes]
rs374461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs375797	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs378391	1.00[CEU][hapmap]
rs3813424	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs389370	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes]
rs395112	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes]
rs397901	0.84[AMR][1000 genomes]
rs399508	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs406811	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs424222	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs426044	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs435006	0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs4899151	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902323	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs4902324	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]
rs55983720	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58989463	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61989891	0.84[AMR][1000 genomes]
rs7149121	0.84[AMR][1000 genomes]
rs7149446	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7158624	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625650	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs762072	0.84[AMR][1000 genomes]
rs8008229	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8013371	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8022462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9323455	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes]
rs9323456	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65372400-65373800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:65372400-65373800	Enhancers	Hela-S3	cervix
3	chr14:65372400-65374000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:65372600-65373800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr14:65373200-65376000	Weak transcription	Primary monocytes fromperipheralblood	blood

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