Variant report

Variant	rs229666
Chromosome Location	chr14:65167944-65167945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65145652..65150075-chr14:65165666..65170172,5	MCF-7	breast:
2	chr14:65155979..65158018-chr14:65167048..65169537,2	MCF-7	breast:
3	chr14:65166002..65169038-chr14:65170333..65174103,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs170682	1.00[AMR][1000 genomes]
rs229607	1.00[AMR][1000 genomes]
rs229647	1.00[AMR][1000 genomes]
rs229652	1.00[AMR][1000 genomes]
rs8006180	1.00[AMR][1000 genomes]
rs8007875	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65160000-65168400	Weak transcription	HMEC	breast
3	chr14:65160000-65168600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:65161200-65169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:65161400-65168200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:65161800-65168400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:65162200-65169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:65163200-65170600	Weak transcription	Right Ventricle	heart
9	chr14:65163400-65170400	Weak transcription	Left Ventricle	heart
10	chr14:65163400-65170600	Weak transcription	Right Atrium	heart
11	chr14:65163600-65168200	Weak transcription	Brain Anterior Caudate	brain
12	chr14:65163600-65170000	Weak transcription	Fetal Heart	heart
13	chr14:65163800-65169600	Weak transcription	Colonic Mucosa	Colon
14	chr14:65164200-65168400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:65165800-65168000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr14:65165800-65169400	Weak transcription	Adipose Nuclei	Adipose
17	chr14:65166000-65168800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:65166000-65169200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:65166000-65169200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:65166000-65170000	Weak transcription	Liver	Liver
21	chr14:65166000-65170200	Weak transcription	Colon Smooth Muscle	Colon
22	chr14:65166200-65168200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:65166200-65168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:65166200-65169200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr14:65166200-65170400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:65166400-65168200	Weak transcription	A549	lung
27	chr14:65166400-65168400	Weak transcription	NHEK	skin
28	chr14:65166400-65169200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:65166400-65169400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:65166600-65168200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr14:65166600-65169200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:65166600-65169200	Weak transcription	Fetal Intestine Small	intestine
33	chr14:65166600-65169200	Weak transcription	Placenta	Placenta
34	chr14:65166600-65169200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:65166600-65169200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr14:65166600-65169400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr14:65166600-65169400	Weak transcription	Pancreas	Pancrea
38	chr14:65166800-65168600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr14:65166800-65169200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr14:65167000-65168400	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr14:65167000-65169000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr14:65167000-65169200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr14:65167200-65168400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr14:65167200-65169200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr14:65167200-65169600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:65167400-65168200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr14:65167400-65169200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:65167600-65168000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:65167600-65168400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr14:65167600-65168400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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