Variant report

Variant	rs229607
Chromosome Location	chr14:65159066-65159067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64969883..64973217-chr14:65158643..65161451,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11622587	1.00[YRI][hapmap]
rs170682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs229647	1.00[AMR][1000 genomes]
rs229652	1.00[AMR][1000 genomes]
rs229666	1.00[AMR][1000 genomes]
rs8006180	1.00[AMR][1000 genomes]
rs8007875	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65149600-65159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:65151200-65159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:65152400-65159200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:65153000-65160200	Weak transcription	Placenta	Placenta
6	chr14:65155400-65160800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:65155600-65165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:65155800-65163000	Weak transcription	Lung	lung
9	chr14:65156000-65159600	Weak transcription	Primary B cells from cord blood	blood
10	chr14:65156000-65160400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:65156000-65163000	Weak transcription	Pancreas	Pancrea
12	chr14:65156000-65165000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:65156000-65165200	Weak transcription	Fetal Thymus	thymus
14	chr14:65156400-65160600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:65156600-65159200	Weak transcription	Stomach Mucosa	stomach
16	chr14:65156600-65162800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:65156800-65161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:65156800-65162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:65156800-65162800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:65156800-65162800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:65156800-65163000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:65157800-65161400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr14:65158800-65160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:65158800-65160000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:65158800-65160000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:65158800-65160000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:65158800-65160000	Enhancers	HMEC	breast
28	chr14:65158800-65160200	Enhancers	NHEK	skin
29	chr14:65158800-65164600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr14:65159000-65159200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:65159000-65159200	Bivalent Enhancer	GM12878-XiMat	blood
32	chr14:65159000-65159400	Enhancers	Esophagus	oesophagus
33	chr14:65159000-65159600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:65159000-65159600	Enhancers	Colonic Mucosa	Colon
35	chr14:65159000-65159600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr14:65159000-65159600	Enhancers	Gastric	stomach
37	chr14:65159000-65159800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr14:65159000-65160000	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr14:65159000-65160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:65159000-65160800	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr14:65159000-65161000	Enhancers	Right Ventricle	heart
42	chr14:65159000-65161000	Enhancers	Spleen	Spleen
43	chr14:65159000-65161600	Enhancers	Fetal Muscle Leg	muscle
44	chr14:65159000-65161600	Enhancers	Left Ventricle	heart
45	chr14:65159000-65161800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:65159000-65161800	Enhancers	Right Atrium	heart
47	chr14:65159000-65162000	Enhancers	Brain Angular Gyrus	brain
48	chr14:65159000-65162000	Enhancers	Brain Anterior Caudate	brain
49	chr14:65159000-65162000	Enhancers	Brain Cingulate Gyrus	brain
50	chr14:65159000-65162000	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links