Variant report

Variant	rs11622587
Chromosome Location	chr14:65128475-65128476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64970155..64972039-chr14:65126466..65128560,2	MCF-7	breast:
2	chr14:65128219..65131005-chr14:65132581..65134716,2	MCF-7	breast:
3	chr14:65127112..65129777-chr14:65132190..65134569,2	MCF-7	breast:
4	chr14:65121948..65123867-chr14:65127242..65130196,2	MCF-7	breast:
5	chr14:65128230..65131121-chr14:65136317..65138576,2	K562	blood:
6	chr14:64970962..64972847-chr14:65127879..65130475,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11158553	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158556	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621301	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622634	1.00[ASN][1000 genomes]
rs11623179	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11623281	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11623902	1.00[ASN][1000 genomes]
rs11625717	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627908	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11848823	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229607	1.00[YRI][hapmap]
rs4346134	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406982	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4998805	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148722	0.96[EUR][1000 genomes]
rs7152924	0.96[EUR][1000 genomes]
rs72724462	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910999	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65122200-65129600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:65122200-65129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:65122200-65129800	Weak transcription	A549	lung
4	chr14:65124000-65129600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:65124200-65129600	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:65126200-65128800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65127400-65129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
9	chr14:65128200-65128600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:65128400-65128600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr14:65128400-65128600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:65128400-65128600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:65128400-65128600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:65128400-65128600	Enhancers	Fetal Kidney	kidney
15	chr14:65128400-65128600	Enhancers	Placenta	Placenta
16	chr14:65128400-65128800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:65128400-65128800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:65128400-65128800	Bivalent Enhancer	GM12878-XiMat	blood
19	chr14:65128400-65128800	Enhancers	HSMMtube	muscle
20	chr14:65128400-65129000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:65128400-65129200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:65128400-65130800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:65128400-65131400	Enhancers	HSMM	muscle

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