Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:65135349..65138709-chr14:65145103..65149484,4	MCF-7	breast:
2	chr14:64973577..64975906-chr14:65136944..65139422,2	MCF-7	breast:
3	chr14:65128230..65131121-chr14:65136317..65138576,2	K562	blood:
4	chr14:64969252..64972831-chr14:65136872..65138614,3	K562	blood:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11158553	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620680	1.00[CHB][hapmap]
rs11621301	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622587	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622634	1.00[ASN][1000 genomes]
rs11623179	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11623281	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11623902	1.00[ASN][1000 genomes]
rs11625717	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627908	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11848823	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767074	1.00[CHB][hapmap]
rs17824827	1.00[CHB][hapmap]
rs35287494	1.00[CHB][hapmap]
rs4346134	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406982	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4998805	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166804	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148722	0.96[EUR][1000 genomes]
rs7152924	0.96[EUR][1000 genomes]
rs723594	1.00[CHB][hapmap]
rs72724462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910999	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
2	chr14:65130400-65138600	Weak transcription	HMEC	breast
3	chr14:65130400-65139800	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:65130600-65139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65133400-65139800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:65134000-65138400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:65134000-65140200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
9	chr14:65136200-65138200	Weak transcription	Fetal Intestine Small	intestine
10	chr14:65136200-65138400	Weak transcription	Stomach Mucosa	stomach
11	chr14:65136200-65138600	Weak transcription	A549	lung

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