Variant report

Variant	rs11627908
Chromosome Location	chr14:65143119-65143120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65141900..65144067-chr14:65145752..65147507,2	MCF-7	breast:
2	chr14:64970414..64973999-chr14:65141090..65144144,5	MCF-7	breast:
3	chr14:65142557..65144344-chr14:65233504..65235561,2	MCF-7	breast:
4	chr14:65137874..65140791-chr14:65142432..65144848,2	K562	blood:

Variant related genes	Relation type
ENSG00000070182	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11158553	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11158556	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11621301	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622587	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622634	0.87[ASN][1000 genomes]
rs11623179	0.84[EUR][1000 genomes]
rs11623281	0.82[EUR][1000 genomes]
rs11623902	0.87[ASN][1000 genomes]
rs11625717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848823	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4346134	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4406982	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4998805	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56166804	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148722	0.82[EUR][1000 genomes]
rs7152924	0.82[EUR][1000 genomes]
rs72724462	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs910999	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
2	chr14:65138400-65144000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:65138600-65143800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:65138800-65144200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:65138800-65144200	Weak transcription	Brain Substantia Nigra	brain
6	chr14:65138800-65146600	Weak transcription	Brain Angular Gyrus	brain
7	chr14:65138800-65146600	Weak transcription	Fetal Intestine Large	intestine
8	chr14:65139000-65143200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr14:65140000-65143400	Enhancers	Spleen	Spleen
10	chr14:65140200-65144400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:65140400-65143400	Enhancers	Placenta	Placenta
12	chr14:65140800-65148800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:65141000-65145400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:65141000-65145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:65141000-65146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:65141000-65146600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:65141000-65146800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:65142200-65143400	Enhancers	Primary B cells from peripheral blood	blood
19	chr14:65142200-65143800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr14:65142400-65143600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr14:65142400-65146600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr14:65142400-65146800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:65142400-65146800	Weak transcription	A549	lung
24	chr14:65142600-65143600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:65142600-65145600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:65142600-65145600	Weak transcription	HMEC	breast
27	chr14:65142600-65146200	Weak transcription	NHEK	skin
28	chr14:65142600-65146400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:65142600-65146400	Weak transcription	Esophagus	oesophagus
30	chr14:65142600-65146600	Weak transcription	Fetal Intestine Small	intestine
31	chr14:65142600-65146600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:65142600-65146800	Weak transcription	Fetal Heart	heart
33	chr14:65142600-65147000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:65142600-65147000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:65142600-65148600	Weak transcription	Stomach Mucosa	stomach
36	chr14:65142600-65149000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:65142600-65154400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:65142800-65147000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr14:65143000-65146600	Weak transcription	Hela-S3	cervix

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