Variant report

Variant	rs11623179
Chromosome Location	chr14:65130483-65130484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11158553	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158556	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621301	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11622587	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11623281	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625717	0.85[EUR][1000 genomes]
rs11627908	0.84[EUR][1000 genomes]
rs11848823	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4346134	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4406982	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4998805	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56166804	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148722	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152924	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72724462	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs910999	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
2	chr14:65128400-65130800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:65128400-65131400	Enhancers	HSMM	muscle
4	chr14:65128600-65132000	Weak transcription	Osteobl	bone
5	chr14:65128600-65133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:65129400-65130600	Enhancers	Fetal Intestine Large	intestine
7	chr14:65129600-65131400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:65129800-65130600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65130000-65130600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:65130200-65130600	Enhancers	Fetal Muscle Trunk	muscle
11	chr14:65130200-65135800	Weak transcription	A549	lung
12	chr14:65130400-65133400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:65130400-65133400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:65130400-65138600	Weak transcription	HMEC	breast
15	chr14:65130400-65139800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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