Variant report

Variant	rs11158553
Chromosome Location	chr14:65121448-65121449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64968793..64973673-chr14:65119564..65122078,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11158556	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620680	1.00[CHB][hapmap]
rs11621301	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622587	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622634	1.00[ASN][1000 genomes]
rs11623179	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11623281	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11623902	1.00[ASN][1000 genomes]
rs11625717	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11627908	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11848823	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767074	1.00[CHB][hapmap]
rs17824827	1.00[CHB][hapmap]
rs35287494	1.00[CHB][hapmap]
rs4346134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4998805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166804	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148722	0.89[EUR][1000 genomes]
rs7152924	0.89[EUR][1000 genomes]
rs723594	1.00[CHB][hapmap]
rs72724462	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910999	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65120200-65122200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:65120400-65121800	Enhancers	HSMMtube	muscle
5	chr14:65120400-65122000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:65120400-65122000	Enhancers	HSMM	muscle
7	chr14:65120400-65122000	Enhancers	NHLF	lung
8	chr14:65120400-65122200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:65120400-65122200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:65120400-65122200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:65120400-65122200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:65120400-65122200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:65120400-65122200	Enhancers	Fetal Muscle Leg	muscle
14	chr14:65120400-65122600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:65120600-65121600	Enhancers	GM12878-XiMat	blood
16	chr14:65120600-65121600	Enhancers	NHEK	skin
17	chr14:65120600-65121800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:65120600-65121800	Enhancers	HMEC	breast
19	chr14:65120600-65121800	Enhancers	HUVEC	blood vessel
20	chr14:65120600-65122000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:65120600-65122000	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:65120600-65122000	Enhancers	NH-A	brain
23	chr14:65120600-65122200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:65120600-65122200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:65120600-65122200	Enhancers	Adipose Nuclei	Adipose
26	chr14:65120600-65122200	Enhancers	Liver	Liver
27	chr14:65120600-65122200	Enhancers	Colon Smooth Muscle	Colon
28	chr14:65120600-65122200	Enhancers	Placenta	Placenta
29	chr14:65120600-65122200	Enhancers	Rectal Smooth Muscle	rectum
30	chr14:65120600-65122200	Enhancers	Right Ventricle	heart
31	chr14:65120800-65121600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:65120800-65121800	Weak transcription	Right Atrium	heart
33	chr14:65120800-65122200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr14:65121000-65121600	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr14:65121000-65121800	Flanking Active TSS	HepG2	liver
36	chr14:65121000-65122000	Enhancers	Fetal Heart	heart
37	chr14:65121000-65122000	Enhancers	Fetal Intestine Small	intestine
38	chr14:65121000-65122000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr14:65121000-65122200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:65121000-65122200	Enhancers	Fetal Stomach	stomach
41	chr14:65121000-65122200	Enhancers	Stomach Mucosa	stomach
42	chr14:65121000-65122200	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr14:65121200-65121600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:65121200-65121600	Weak transcription	Pancreas	Pancrea
45	chr14:65121200-65121800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:65121200-65121800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr14:65121200-65122000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr14:65121200-65122000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr14:65121200-65122000	Enhancers	Fetal Intestine Large	intestine
50	chr14:65121200-65122000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links