Variant report

Variant	rs723594
Chromosome Location	chr14:65054858-65054859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65054460..65056543-chr14:65059198..65061285,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10891	0.90[AMR][1000 genomes]
rs11158553	1.00[CHB][hapmap]
rs11158556	1.00[CHB][hapmap]
rs11620680	1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes]
rs11621195	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11622028	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11623381	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11624854	0.86[AMR][1000 genomes]
rs11627525	0.81[TSI][hapmap]
rs11627602	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11628524	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11629135	0.90[TSI][hapmap]
rs17767074	1.00[CHB][hapmap]
rs17824827	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2123456	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2123457	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2236222	0.90[TSI][hapmap]
rs35287494	1.00[CHB][hapmap];0.87[YRI][hapmap]
rs3742609	1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs45511097	0.80[AMR][1000 genomes]
rs55791907	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56007903	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56403644	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57451210	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58644746	0.90[AMR][1000 genomes]
rs59587911	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7146831	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154714	1.00[JPT][hapmap]
rs7156882	1.00[JPT][hapmap]
rs73269771	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74056329	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74056334	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74056445	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8003567	0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65047800-65059000	Weak transcription	Gastric	stomach
3	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
4	chr14:65053200-65057000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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