Variant report

Variant	rs74056445
Chromosome Location	chr14:64978192-64978193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64896419..64897383-chr14:64977488..64978469,2	MCF-7	breast:
2	chr14:64977903..64978449-chr14:65103208..65103980,2	MCF-7	breast:
3	chr14:64945492..64946116-chr14:64977349..64978438,3	MCF-7	breast:
4	chr14:64854562..64856178-chr14:64977120..64979852,2	K562	blood:
5	chr14:64810341..64812105-chr14:64976610..64978865,2	MCF-7	breast:
6	chr14:64853391..64855035-chr14:64977891..64979438,2	MCF-7	breast:
7	chr14:64810613..64811246-chr14:64977702..64978451,2	K562	blood:
8	chr14:64810659..64811466-chr14:64977783..64978461,3	MCF-7	breast:
9	chr14:64812043..64814935-chr14:64975290..64978233,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100714	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10891	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620680	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11621195	0.84[EUR][1000 genomes]
rs11621442	0.98[EUR][1000 genomes]
rs11622028	0.83[EUR][1000 genomes]
rs11622591	0.93[EUR][1000 genomes]
rs11623381	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11624854	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11627525	0.89[EUR][1000 genomes]
rs11627602	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628440	0.93[EUR][1000 genomes]
rs11628524	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11629135	0.98[EUR][1000 genomes]
rs2123457	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2236222	0.96[EUR][1000 genomes]
rs35287494	0.93[ASN][1000 genomes]
rs3742609	1.00[EUR][1000 genomes]
rs45511097	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55791907	0.83[EUR][1000 genomes]
rs56007903	1.00[EUR][1000 genomes]
rs56403644	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57451210	0.86[AMR][1000 genomes]
rs58644746	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59587911	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7146831	0.86[EUR][1000 genomes]
rs723594	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs727757	0.93[ASN][1000 genomes]
rs73269771	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74056329	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74056334	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74056441	0.96[AFR][1000 genomes]
rs74056443	0.96[AFR][1000 genomes]
rs8003567	0.93[EUR][1000 genomes]
rs8012229	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64978800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:64972800-64979200	Enhancers	Small Intestine	intestine
3	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:64973000-64979400	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:64973800-64978400	Enhancers	HepG2	liver
8	chr14:64973800-64979400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:64973800-64980000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:64974000-64984400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:64974200-64979400	Enhancers	Primary B cells from cord blood	blood
12	chr14:64974400-64988200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:64974600-64978200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:64974800-64978400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:64974800-64978400	Weak transcription	NH-A	brain
17	chr14:64974800-64979200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr14:64974800-64980000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
21	chr14:64974800-65006000	Weak transcription	Ovary	ovary
22	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
23	chr14:64975200-64978200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:64975200-64978400	Enhancers	Hela-S3	cervix
25	chr14:64975200-64987600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:64975200-64988200	Weak transcription	Fetal Muscle Leg	muscle
27	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
28	chr14:64975400-64978800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr14:64976000-64978200	Enhancers	K562	blood
30	chr14:64976000-64978400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:64976000-64981000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:64976000-64981000	Weak transcription	Aorta	Aorta
33	chr14:64976000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:64976000-64995400	Weak transcription	Gastric	stomach
35	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
36	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
37	chr14:64976200-64979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:64976200-64980000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr14:64976200-64988200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr14:64976200-64988200	Weak transcription	Fetal Intestine Large	intestine
41	chr14:64976200-64988200	Weak transcription	Placenta	Placenta
42	chr14:64976200-64988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
44	chr14:64976600-64978400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr14:64976800-64978200	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr14:64976800-64978200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:64976800-64978400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr14:64976800-64978400	Enhancers	Muscle Satellite Cultured Cells	--
49	chr14:64976800-64978400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr14:64976800-64978600	Enhancers	Primary hematopoietic stem cells	blood

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