Variant report

Variant	rs57451210
Chromosome Location	chr14:65049338-65049339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10891	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11620680	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11621195	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11622028	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11623381	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624854	0.90[AMR][1000 genomes]
rs11627602	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11628524	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2123456	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2123457	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs45511097	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55791907	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56007903	0.84[AMR][1000 genomes]
rs56403644	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58016138	0.88[AFR][1000 genomes]
rs58644746	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59587911	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60458560	0.94[AFR][1000 genomes]
rs60591932	0.94[AFR][1000 genomes]
rs61375379	0.94[AFR][1000 genomes]
rs7146831	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs723594	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73269771	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74056329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056334	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74056356	0.94[AFR][1000 genomes]
rs74056357	0.94[AFR][1000 genomes]
rs74056445	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65047200-65049400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65047400-65049400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:65047400-65049400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:65047400-65049600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:65047800-65059000	Weak transcription	Gastric	stomach
8	chr14:65048000-65049400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:65048000-65051000	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:65048000-65051000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
12	chr14:65049000-65050800	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:65049000-65051000	Weak transcription	Psoas Muscle	Psoas
14	chr14:65049000-65052000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:65049200-65050400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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