Variant report

Variant	rs58644746
Chromosome Location	chr14:65011672-65011673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65006007..65010466-chr14:65011368..65016510,6	MCF-7	breast:
2	chr14:64967941..64976890-chr14:65001097..65012463,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10891	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621195	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11621442	0.95[EUR][1000 genomes]
rs11622028	0.85[AMR][1000 genomes]
rs11622591	0.89[EUR][1000 genomes]
rs11623381	1.00[AMR][1000 genomes]
rs11624854	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11627525	0.86[EUR][1000 genomes]
rs11627602	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11628440	0.89[EUR][1000 genomes]
rs11628524	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11629135	0.95[EUR][1000 genomes]
rs2123456	0.80[AMR][1000 genomes]
rs2123457	0.90[AMR][1000 genomes]
rs2236222	0.93[EUR][1000 genomes]
rs35287494	0.93[ASN][1000 genomes]
rs3742609	0.96[EUR][1000 genomes]
rs45511097	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55791907	0.85[AMR][1000 genomes]
rs56007903	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56403644	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57451210	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59587911	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7146831	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs723594	0.90[AMR][1000 genomes]
rs727757	0.93[ASN][1000 genomes]
rs73269771	0.91[AMR][1000 genomes]
rs74056329	0.95[AMR][1000 genomes]
rs74056334	0.95[AMR][1000 genomes]
rs74056445	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003567	0.89[EUR][1000 genomes]
rs8012229	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564907	chr14:65011509-65018663	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65005800-65012000	Active TSS	Brain Angular Gyrus	brain
2	chr14:65005800-65012000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:65006000-65012000	Active TSS	Brain Substantia Nigra	brain
4	chr14:65006400-65012000	Active TSS	Brain Cingulate Gyrus	brain
5	chr14:65006400-65012400	Active TSS	Brain Hippocampus Middle	brain
6	chr14:65008200-65011800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr14:65008600-65016200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:65009000-65016200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65009200-65012200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr14:65009400-65012000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr14:65009400-65013000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:65009400-65016600	Weak transcription	Gastric	stomach
13	chr14:65009600-65012000	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr14:65009600-65016200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65009800-65012200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:65010200-65015600	Weak transcription	Psoas Muscle	Psoas
17	chr14:65010400-65015800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr14:65010400-65015800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:65010400-65016600	Weak transcription	Aorta	Aorta
20	chr14:65010600-65012000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr14:65010600-65012000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:65010600-65012000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:65010800-65011800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr14:65011200-65015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:65011400-65011800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr14:65011400-65011800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr14:65011400-65012600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr14:65011400-65015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:65011400-65016000	Weak transcription	NHDF-Ad	bronchial
30	chr14:65011600-65011800	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr14:65011600-65011800	Active TSS	A549	lung
32	chr14:65011600-65012200	Weak transcription	Brain Anterior Caudate	brain
33	chr14:65011600-65012400	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr14:65011600-65016000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:65011600-65016000	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:65011600-65016000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:65011600-65016000	Weak transcription	NHLF	lung
38	chr14:65011600-65016200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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