Variant report
| Variant | rs73269771 |
|---|---|
| Chromosome Location | chr14:65063221-65063222 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZBTB25-4 | chr14:65063180-65063254 | ENSG00000259076.1 |
| 2 | lnc-ZBTB25-4 | chr14:65063180-65063231 | ENSG00000259076.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10891 | 0.91[AMR][1000 genomes] |
| rs11620680 | 0.91[AMR][1000 genomes] |
| rs11621195 | 0.90[EUR][1000 genomes] |
| rs11622028 | 0.98[EUR][1000 genomes] |
| rs11623381 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11624854 | 0.86[AMR][1000 genomes] |
| rs11627602 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11628524 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2123456 | 0.95[EUR][1000 genomes] |
| rs2123457 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3742609 | 0.81[EUR][1000 genomes] |
| rs45511097 | 0.82[AMR][1000 genomes] |
| rs55766182 | 0.83[EUR][1000 genomes] |
| rs55791907 | 0.98[EUR][1000 genomes] |
| rs56007903 | 0.81[EUR][1000 genomes] |
| rs56403644 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs57451210 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs58644746 | 0.91[AMR][1000 genomes] |
| rs59587911 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7146831 | 0.88[EUR][1000 genomes] |
| rs723594 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs74056329 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs74056334 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74056445 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs8007506 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049097 | chr14:65027753-65202018 | Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv974347 | chr14:65062237-65068257 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:65048800-65068400 | Weak transcription | Pancreas | Pancrea |
