Variant report

Variant	rs59587911
Chromosome Location	chr14:65042513-65042514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65041963..65044898-chr14:65055215..65057361,2	MCF-7	breast:
2	chr14:64969348..64971878-chr14:65042301..65045204,3	MCF-7	breast:
3	chr14:65035525..65037855-chr14:65039910..65042725,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10891	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11620680	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11621195	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11622028	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11622591	1.00[AFR][1000 genomes]
rs11623381	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11624854	0.86[AMR][1000 genomes]
rs11627525	1.00[AFR][1000 genomes]
rs11627602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11628524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2123456	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2123457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3742609	0.81[EUR][1000 genomes]
rs45511097	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55766182	1.00[AFR][1000 genomes]
rs55791907	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56007903	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56403644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57451210	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58644746	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7146831	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs723594	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73269771	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74056329	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74056334	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74056445	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8012229	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65036200-65044000	Weak transcription	Fetal Kidney	kidney
3	chr14:65040200-65047200	Weak transcription	Psoas Muscle	Psoas
4	chr14:65040200-65047400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:65040200-65047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:65040200-65048000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:65040400-65047200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:65040400-65048000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:65041200-65045200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:65041800-65047200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr14:65041800-65047400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:65041800-65048000	Weak transcription	H1 Cell Line	embryonic stem cell

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