Variant report

Variant	rs11623381
Chromosome Location	chr14:65058670-65058671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65046215..65048699-chr14:65056837..65059085,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10891	1.00[AMR][1000 genomes]
rs11158553	1.00[CHB][hapmap]
rs11158556	1.00[CHB][hapmap]
rs11620680	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11621195	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11622028	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11624854	0.95[AMR][1000 genomes]
rs11627602	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11628524	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17767074	1.00[CHB][hapmap]
rs17824827	1.00[CHB][hapmap]
rs2123456	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2123457	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35287494	1.00[CHB][hapmap]
rs3742609	0.81[EUR][1000 genomes]
rs45511097	0.90[AMR][1000 genomes]
rs55766182	0.83[EUR][1000 genomes]
rs55791907	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56007903	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56403644	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57451210	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58016138	0.88[AFR][1000 genomes]
rs58644746	1.00[AMR][1000 genomes]
rs59587911	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60458560	0.94[AFR][1000 genomes]
rs60591932	0.94[AFR][1000 genomes]
rs61375379	0.94[AFR][1000 genomes]
rs7146831	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154714	1.00[JPT][hapmap]
rs7156882	1.00[JPT][hapmap]
rs723594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73269771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056329	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056334	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056356	0.94[AFR][1000 genomes]
rs74056357	0.94[AFR][1000 genomes]
rs74056445	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65047800-65059000	Weak transcription	Gastric	stomach
2	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
3	chr14:65058200-65058800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:65058400-65058800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:65058400-65059000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:65058600-65059000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:65058600-65059000	Enhancers	Osteobl	bone

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