Variant report

Variant	rs74056357
Chromosome Location	chr14:65112171-65112172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65005413..65007156-chr14:65110465..65112406,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11623381	0.94[AFR][1000 genomes]
rs45467597	1.00[AMR][1000 genomes]
rs45544744	1.00[AMR][1000 genomes]
rs55919712	1.00[AMR][1000 genomes]
rs56357777	1.00[AMR][1000 genomes]
rs57451210	0.94[AFR][1000 genomes]
rs57473635	1.00[AMR][1000 genomes]
rs58016138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60458560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60835654	1.00[AMR][1000 genomes]
rs61375379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056318	1.00[AMR][1000 genomes]
rs74056329	0.94[AFR][1000 genomes]
rs74056347	1.00[AMR][1000 genomes]
rs74056349	1.00[AMR][1000 genomes]
rs74056356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056360	1.00[AMR][1000 genomes]
rs74056438	1.00[AMR][1000 genomes]
rs74056444	1.00[AMR][1000 genomes]
rs74056454	1.00[AMR][1000 genomes]
rs74056455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:65106800-65112600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:65106800-65112600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:65106800-65115400	Weak transcription	Fetal Intestine Small	intestine
5	chr14:65110600-65116200	Enhancers	Placenta	Placenta
6	chr14:65111000-65113200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65111000-65113400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr14:65111200-65112400	Enhancers	Colon Smooth Muscle	Colon
9	chr14:65111200-65113200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr14:65111200-65113200	Enhancers	HSMMtube	muscle
11	chr14:65111200-65113400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:65111400-65112200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:65111400-65112200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr14:65111400-65113200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:65111400-65113200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:65111400-65113200	Enhancers	Fetal Stomach	stomach
17	chr14:65111400-65113200	Enhancers	Ovary	ovary
18	chr14:65111400-65113200	Enhancers	Rectal Smooth Muscle	rectum
19	chr14:65111400-65113200	Enhancers	NH-A	brain
20	chr14:65111400-65113400	Enhancers	Fetal Muscle Leg	muscle
21	chr14:65111600-65112200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:65111600-65112400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:65111600-65112400	Enhancers	Osteobl	bone
24	chr14:65111600-65112600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr14:65111600-65112800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:65111600-65112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:65111600-65113000	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr14:65111600-65113200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr14:65111600-65113200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr14:65111600-65113200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:65111600-65113200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:65111600-65113200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:65111600-65113400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:65111600-65113400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr14:65111600-65113400	Enhancers	HSMM	muscle
36	chr14:65111600-65113400	Enhancers	NHDF-Ad	bronchial
37	chr14:65111600-65113400	Enhancers	NHLF	lung
38	chr14:65111800-65112200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:65111800-65112200	Enhancers	Fetal Intestine Large	intestine
40	chr14:65111800-65112200	Enhancers	Fetal Muscle Trunk	muscle
41	chr14:65111800-65112200	Enhancers	HMEC	breast
42	chr14:65111800-65112800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr14:65111800-65112800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:65111800-65112800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:65111800-65112800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr14:65111800-65112800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:65111800-65113000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:65111800-65113000	Enhancers	Adipose Nuclei	Adipose
49	chr14:65111800-65113000	Enhancers	Fetal Heart	heart
50	chr14:65112000-65112200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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