Variant report
| Variant | rs61375379 |
|---|---|
| Chromosome Location | chr14:65064296-65064297 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11623381 | 0.94[AFR][1000 genomes] |
| rs45467597 | 1.00[AMR][1000 genomes] |
| rs45544744 | 1.00[AMR][1000 genomes] |
| rs55919712 | 1.00[AMR][1000 genomes] |
| rs56357777 | 1.00[AMR][1000 genomes] |
| rs57451210 | 0.94[AFR][1000 genomes] |
| rs57473635 | 1.00[AMR][1000 genomes] |
| rs58016138 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59308789 | 1.00[ASN][1000 genomes] |
| rs59834551 | 1.00[ASN][1000 genomes] |
| rs60458560 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60591932 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60835654 | 1.00[AMR][1000 genomes] |
| rs61495645 | 1.00[ASN][1000 genomes] |
| rs7154714 | 1.00[ASN][1000 genomes] |
| rs7156658 | 1.00[ASN][1000 genomes] |
| rs7156882 | 1.00[ASN][1000 genomes] |
| rs74056318 | 1.00[AMR][1000 genomes] |
| rs74056329 | 0.94[AFR][1000 genomes] |
| rs74056347 | 1.00[AMR][1000 genomes] |
| rs74056349 | 1.00[AMR][1000 genomes] |
| rs74056356 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74056357 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74056360 | 1.00[AMR][1000 genomes] |
| rs74056438 | 1.00[AMR][1000 genomes] |
| rs74056444 | 1.00[AMR][1000 genomes] |
| rs74056454 | 1.00[AMR][1000 genomes] |
| rs74056455 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049097 | chr14:65027753-65202018 | Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv974347 | chr14:65062237-65068257 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:65048800-65068400 | Weak transcription | Pancreas | Pancrea |
