Variant report

Variant	rs7154714
Chromosome Location	chr14:65104667-65104668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64969082..64972428-chr14:65101982..65105034,6	MCF-7	breast:
2	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
3	chr14:65098847..65101532-chr14:65103067..65106443,3	MCF-7	breast:
4	chr14:65005746..65011576-chr14:65100375..65105465,11	MCF-7	breast:
5	chr14:65101784..65105032-chr14:65169385..65172923,3	MCF-7	breast:
6	chr14:65005436..65008898-chr14:65101749..65105481,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58016138	1.00[ASN][1000 genomes]
rs59308789	1.00[ASN][1000 genomes]
rs59834551	1.00[ASN][1000 genomes]
rs61375379	1.00[ASN][1000 genomes]
rs61495645	1.00[ASN][1000 genomes]
rs7156658	1.00[ASN][1000 genomes]
rs7156882	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs723594	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:65099400-65111600	Weak transcription	Osteobl	bone
4	chr14:65101800-65104800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:65103000-65106800	Enhancers	Fetal Intestine Small	intestine
6	chr14:65103000-65109600	Enhancers	Placenta	Placenta
7	chr14:65103200-65105000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:65103200-65105000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:65103200-65105000	Enhancers	Adipose Nuclei	Adipose
10	chr14:65103200-65106600	Enhancers	NHEK	skin
11	chr14:65103200-65106800	Enhancers	NHLF	lung
12	chr14:65103400-65105200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:65103400-65105200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:65103400-65106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:65103400-65106400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:65103400-65106400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:65103400-65106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:65103400-65107000	Enhancers	Liver	Liver
19	chr14:65103400-65111000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:65103600-65105200	Enhancers	HMEC	breast
21	chr14:65103600-65106600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:65103800-65105000	Weak transcription	NH-A	brain
23	chr14:65103800-65106000	Weak transcription	GM12878-XiMat	blood
24	chr14:65103800-65106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:65103800-65111400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
28	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:65104000-65105400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:65104000-65106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:65104000-65108800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:65104200-65108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:65104400-65105000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:65104400-65105000	Enhancers	Fetal Lung	lung
35	chr14:65104400-65105000	Enhancers	HSMM	muscle
36	chr14:65104400-65105000	Enhancers	NHDF-Ad	bronchial
37	chr14:65104400-65105200	Enhancers	Fetal Intestine Large	intestine
38	chr14:65104400-65106800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr14:65104600-65105200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr14:65104600-65106000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr14:65104600-65106000	Weak transcription	A549	lung
42	chr14:65104600-65106600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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